Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1559 ATGTGTGTGTGTGTGTGTGTGTGTAATGTAATAACTTGGCTATGTGGCAAACCTTGGACCTTAAGGCTGGAAGCGTGGTGTTGGTCTTGGTTGGCGGTTATGCCCAATATCAGATCAGTAATGGCAACAACCTCTTCTTTCTTCTTCACTTTGCTATTGCTGCTTCTCACTGTTTCGGATTTGTTTGTGCAAAGCCGAGGCCTAAATTTTGGAATCAACTACGGGCAAAAGGCCAACAACCTTCCATCTCCATCCCGTGTGGCTGTTCTTATAAAATCTCTGAATGTCTCCAGAATCAAACTCTATGATGCTGATCCAAATGTTCTATCTGCATTCTCCAATTCAGATGTGGAATTCATCATAGGGCTAGAGAACGAGAAACTGCAGAGCATGACAGACCCTTCTAAGGCTCAGAGCTGGGTTCAACAGAATGTTCAACCTTACATTTCACAAACCAGAATCACTTGCATCACTGTAGGAAACGAGGTCTTCAACTACAATGATACTCAGCTCACAGAAAATCTTCTCCCTGCAATGCAAAGTGTGTATAATGCCCTTGTTAATCTAGGACTAGCACAACAAGTTACTGTTACAACTGCTCATTCTTTCAACATTTTAGCCAATTCTTTCCCTCCTTCATCTGGGGCATTCAGGCAAGATCTGATACAATACATTCAACCCCTCCTTAGCTTTCATGCTCAAATCAAATCACCCTTCCTCATTAATGCATATCCATTTTTTGCATACAAGGACAATCCAAACCAAATCTCCTTAAAATATGTGCTGTTTCAGCCAAATCAAGGGGCCACTGATCCAAATACCAATTTGCTTTATGATAACATGTTGTATGCTCAAATTGATGCTGTCTACGCGGCCATCAAAGCGCTGGAGCATACCGATATAGAAGTGAGGATTTCGGAAACCGGTTGGCCTTCTAAGGGTGACCCTGATGAGGTTGGAGCCACACCACAGAATGCAGAAATATATAATAGTAATTTGTTGAAGAGGATAGAGCAGAAGCAAGGCACTCCTGCAAATCCATCTGTTCCAATTGATATTTTTGTATTTGCACTTTTCAATGAGAATTTGAAGATTGGTCCTGTTTCTGAGAGAAACTACGGCCTTTATTATCCTGATGGTACCCCAGTTTACAACATTGGATTACAAGGTTATCTCCCAGTCCCAGAAATGGTTATGGAGTCCAAATCTAATGCTTTGTCCATCAATTTTCTCATCTACATATTTACATGTTTGTTGTTCACTTGGGAGCTTTCAAGACCGTGA 1284 0.4136 MCVCVCVCNVITWLCGKPWTLRLEAWCWSWLAVMPNIRSVMATTSSFFFTLLLLLLTVSDLFVQSRGLNFGINYGQKANNLPSPSRVAVLIKSLNVSRIKLYDADPNVLSAFSNSDVEFIIGLENEKLQSMTDPSKAQSWVQQNVQPYISQTRITCITVGNEVFNYNDTQLTENLLPAMQSVYNALVNLGLAQQVTVTTAHSFNILANSFPPSSGAFRQDLIQYIQPLLSFHAQIKSPFLINAYPFFAYKDNPNQISLKYVLFQPNQGATDPNTNLLYDNMLYAQIDAVYAAIKALEHTDIEVRISETGWPSKGDPDEVGATPQNAEIYNSNLLKRIEQKQGTPANPSVPIDIFVFALFNENLKIGPVSERNYGLYYPDGTPVYNIGLQGYLPVPEMVMESKSNALSINFLIYIFTCLLFTWELSRP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1559 427 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 14 46 407 - -
Gso12g1559 427 SUPERFAMILY (Trans)glycosidases 70 386 IPR017853 -
Gso12g1559 427 Gene3D Glycosidases 69 391 - -
Gso12g1559 427 Pfam Glycosyl hydrolases family 17 71 386 IPR000490 GO:0004553|GO:0005975
Gso12g1559 427 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 46 407 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1559 Gso-Chr12 39072687 39076723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1559 120 422 Glycoside Hydrolase AT2G27500 66.118 5.47e-152 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1559 - - gmx:100811467 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1559 12 39072687 39076723 Gso11g3289 11 48698910 48703843 GST
Gso12g1559 12 39072687 39076723 Gso12g0727 12 7363353 7367766 PCT
Gso12g1559 12 39072687 39076723 Gso11g1385 11 15800367 15807516 PCT
Gso12g0727 12 7363353 7367766 Gso12g1559 12 39072687 39076723 PCT
Gso11g1385 11 15800367 15807516 Gso12g1559 12 39072687 39076723 PCT