Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1528 ATGCAGACTCTTTCGCCGCCTACTTCCAACGCTCTCAATTTGAAGCACGTTCTTCGCCCGCGTCGAGTCGCGCCTAGCCGAATCTTTGTCAAATGCGCCTTCGCGTCTGAGCCCGCCAGCTACGGGGTCGGCTCGAGCCGAGCCGATTGGCAGAGCTCCTGCGCCATCTTAGCCAGCAAGGTCGTTTCTCAAGAACAAACCTCCTCCGCTGACCAGAACGGCGGCACCGCCGACCATATCGCCGCCGTCAACGGCCACAAAGCCGCCGTCAGCGACCTCCAACTCGTTCCAATTGGAAATCTAGCACAGGCCAACAACAAGCCGCTCCCGCCGAAGCCGCTCACAATCTCCGACCTCTCGCCGGCGCCGATGCACGGCTCCAAGCTCCGCGTCGCGTACCAAGGCGTTCCCGGCGCGTACTCCGAGGCAGCCGCCGGCAAGGCCTATCCGAACTGCGAGGCCATTCCCTGCGACCAGTTCGAGGTTGCGTTCCAGGCGGTGGAGCTCTGGATCGCCGATCGAGCGGTTATGCCGGTCGAAAACTCCCTCGGCGGCTCGATCCACCGGAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCGGTCCACCACTGCCTCCTCGCGCTCCCCGGCGTCCGAAAGGAGTTCCTCACGCGAGTGATTTCGCATCCGCAGGCACTCGCGCAGTGCGAGCACACTCTCACCAAACTCGGCCTGAACGTGGCGCGCGAGGCCGTGGACGACACCGCCGGCGCCGCCGAGTTCGTCGCCACGAATAACCTCCGCGATACCGCCGCCATCGCGAGCGCACGAGCGGCGGAGCTCTACGGCCTGAACGTGATGGCGGACGGAATCCAAGACGATCCGAGCAACGTCACGCGGTTCGTGATGCTGGCGAGAGAGCCTATCATTCCGCGCACGGACCGTCCTTTCAAGACGAGCATTGTTTTCGCACACGACAAGGGAACTTCGGTGCTCTTCAAAGTGCTTTCCGCGTTCGCGTTCCGTAACATCAGTCTAACGAAGATCGAGTCACGGCCGCATCGGAACCGTCCGATTAGGCTGGTGGATGACGCGAACGTGGGAACAGCGAAGCACTTCGAGTACTTGTTCTACGTTGATTTTGAGGCCTCCATGGCTGAGGTTAGGGCACAGAACGCGTTGGCGGAGGTGCAGGAATTCACGTCTTTCTTGCGAGTGTTGGGGAGTTACCCTATGGACATGACACCCTGGACACCTTCCTCCCGGGGAGATTAG 1278 0.6189 MQTLSPPTSNALNLKHVLRPRRVAPSRIFVKCAFASEPASYGVGSSRADWQSSCAILASKVVSQEQTSSADQNGGTADHIAAVNGHKAAVSDLQLVPIGNLAQANNKPLPPKPLTISDLSPAPMHGSKLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVMPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQALAQCEHTLTKLGLNVAREAVDDTAGAAEFVATNNLRDTAAIASARAAELYGLNVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWTPSSRGD* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1528 425 CDD ACT_CM-PDT 319 412 - -
Gso12g1528 425 CDD PBP2_Ct-PDT_like 128 309 - -
Gso12g1528 425 SUPERFAMILY Periplasmic binding protein-like II 130 313 - -
Gso12g1528 425 Gene3D - 125 213 - -
Gso12g1528 425 ProSiteProfiles ACT domain profile. 321 412 IPR002912 -
Gso12g1528 425 ProSiteProfiles Prephenate dehydratase domain profile. 130 307 IPR001086 GO:0004664|GO:0009094
Gso12g1528 425 PANTHER AROGENATE DEHYDRATASE 33 422 - -
Gso12g1528 425 Gene3D - 314 415 - -
Gso12g1528 425 ProSitePatterns Prephenate dehydratase signature 1. 283 305 IPR018528 GO:0004664|GO:0009094
Gso12g1528 425 SUPERFAMILY ACT-like 302 414 IPR045865 -
Gso12g1528 425 Pfam Prephenate dehydratase 131 309 IPR001086 GO:0004664|GO:0009094
Gso12g1528 425 ProSitePatterns Prephenate dehydratase signature 2. 347 354 IPR018528 GO:0004664|GO:0009094
Gso12g1528 425 Gene3D - 214 295 - -
Gso12g1528 425 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 33 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1528 Gso-Chr12 38701173 38703140 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1528 K05359 - gmx:100797636 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1528 12 38701173 38703140 Gso11g3317 11 48958062 48959903 GST
Gso12g1528 12 38701173 38703140 Gso12g0695 12 6927513 6929361 PCT
Gso12g1528 12 38701173 38703140 Gso11g1423 11 16386437 16388400 PCT
Gso12g0695 12 6927513 6929361 Gso12g1528 12 38701173 38703140 PCT
Gso11g1423 11 16386437 16388400 Gso12g1528 12 38701173 38703140 PCT