Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1423 ATGCAGACCCTCAATCAACCGTGCCCCAACCCTCTCAACTATCTAACCCGAGCGCGACACTCGGCTATTCGGTTCGCGCCGACCCGATTCACCGTCAAATGCGGCTACGGCTTTGAATCCGCGAGTTTCTCGCAGGGAGTCGGCGCGAGCCGAGCCGATTGGCAAAGCTCGTGCGCCATCTTAGCCAGTAAAGTCGTGTCGCAGAGGGAAGATTCTCCCGCCCACGGCGGCGACAACAACAACAACGTCGGCGCCGTGAACGGCCACAACGCCGCCGTAACGAATCTAAATCTCGTACCTGTCAAAGCCGATGATGAAAACATCAAGCCGATTCCGCCGAAGCCGCTCACGATCTCCGACCTGTTGCCGGCGCCGATGCACGGCTCGCAGCTGCGCGTGGCGTACCAAGGCGTTCCCGGCGCGTACTCCGAAGCCGCGGCGGGGAAAGCGTATCCGAACGGAGAGGCGATTCCGTGTGACCAGTTCGAGGTGGCGTTTCAAGCGGTGGAGCTCTGGATCGCGGATCGGGCGGTTTTACCGGTCGAAAACTCCTTCGGCGGCTCGATCCACCGCAATTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCAGTGCACCACTGCCTCCTCGCTCTCCCCGGCGTCCGCAAGGAGTCCCTCGAGCGCGTGATCTCACATCCGCAGGCCTTAGCGCAGTGCGAGCACTCACTTACAAAACTCGGCCTCACCGTGGCGCGTGAGGCCGTCGACGATACTGCCGGCGCTGCCGAGTTCGTCGCCAAGAACGACCTCCGCTCCACGGCGGCGATCGCGAGCGCGCGCGCGGCGGAGCTCTACGGCCTCCAGATCCTGGCCGACGGAATCCAGGATGATCCGAATAACGTGACGCGGTTCGTGATGCTGGCGCGCGAACCGATCATTCCGCGCACGGATCGGCCGTTCAAGACGAGCATCGTGTTCGCGCACGATAAAGGAACCTCAGTGCTCTTCAAAGTGCTTTCCGCGTTTGCGTTCAGAAACATAAGCTTAACAAAGATCGAGTCCAGGCCTCACCGTAGCCGTCCGATTCGCGTGGTTGATGATGAGAGTGAAGGAACCGCGAAGCACTTTGAGTATCTGTTTTACATTGATTTCGAAGCTTCTATGGCTGAGGTTAGGGCACAGAACGCACTCGCTGAGGTTCAAGAATTCACTTCCTTCTTGCGAGTCTTGGGGAGTTACCCTATCGATATGTCACCCTGGACTCCCTCTTGTCCGCGCCAAAATTAA 1287 0.5975 MQTLNQPCPNPLNYLTRARHSAIRFAPTRFTVKCGYGFESASFSQGVGASRADWQSSCAILASKVVSQREDSPAHGGDNNNNVGAVNGHNAAVTNLNLVPVKADDENIKPIPPKPLTISDLLPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNGEAIPCDQFEVAFQAVELWIADRAVLPVENSFGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKESLERVISHPQALAQCEHSLTKLGLTVAREAVDDTAGAAEFVAKNDLRSTAAIASARAAELYGLQILADGIQDDPNNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRSRPIRVVDDESEGTAKHFEYLFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPIDMSPWTPSCPRQN* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1423 428 ProSiteProfiles Prephenate dehydratase domain profile. 132 309 IPR001086 GO:0004664|GO:0009094
Gso11g1423 428 Gene3D - 127 215 - -
Gso11g1423 428 SUPERFAMILY ACT-like 304 415 IPR045865 -
Gso11g1423 428 Pfam Prephenate dehydratase 133 311 IPR001086 GO:0004664|GO:0009094
Gso11g1423 428 Gene3D - 316 417 - -
Gso11g1423 428 CDD ACT_CM-PDT 321 414 - -
Gso11g1423 428 ProSitePatterns Prephenate dehydratase signature 2. 349 356 IPR018528 GO:0004664|GO:0009094
Gso11g1423 428 ProSitePatterns Prephenate dehydratase signature 1. 285 307 IPR018528 GO:0004664|GO:0009094
Gso11g1423 428 PANTHER AROGENATE DEHYDRATASE 21 424 - -
Gso11g1423 428 SUPERFAMILY Periplasmic binding protein-like II 132 315 - -
Gso11g1423 428 ProSiteProfiles ACT domain profile. 323 414 IPR002912 -
Gso11g1423 428 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 21 424 - -
Gso11g1423 428 Gene3D - 216 297 - -
Gso11g1423 428 CDD PBP2_Ct-PDT_like 132 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1423 Gso-Chr11 16386437 16388400 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1423 K05359 - gmx:100800074 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1423 11 16386437 16388400 Gso11g1423 11 16386437 16388400 ECH
Gso12g0695 12 6927513 6929361 Gso11g1423 11 16386437 16388400 GST
Gso12g1528 12 38701173 38703140 Gso11g1423 11 16386437 16388400 PCT
Gso11g3317 11 48958062 48959903 Gso11g1423 11 16386437 16388400 PCT
Gso11g1423 11 16386437 16388400 Gso12g1528 12 38701173 38703140 PCT
Gso11g1423 11 16386437 16388400 Gso11g3317 11 48958062 48959903 PCT