Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1513 ATGGCTTCGTCGCGAGTAGATCTGGATGGGAACCCCATAAAGCCCATCACCATTTGCATGATTGGCGCCGGTGGCTTCATTGGGTCCCACCTCTGCGAGAAGCTCATGTCGGAGACCCCTCACAGTGTCCTCGCCTTGGATGTCTACAATGACAAGATCAAACACCTCTTGGAACCCCACACGCTCCCTTGGGCCTCTCGCATCCAGTTCCATCGCCTCAACATCAAGCACGATTCCCGTCTCGAAGGCCTCATCAAAATGTCAGATCTGACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGTGAAGTCTATGGGAAAACGATTGGAAGCTTCCTCCCCAAAGATAGTCCTCTTCGTCAGGATCCTGCATACTACGTACTTAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCAATTGAAAAGCAGAGATGGTCCTATGCCTGTGCTAAGCAGTTGATTGAGAGGCTTGTTTATGCTGAGGGTGCTGAAAATGGCTTGGAATTCACAATTGTGAGGCCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGCCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATAATCTCCTCCGTGGAGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGGACTTTTGTGTATATTAAGGATGCTATTGAAGCTGTCTTATTGATGATTGAAAATCCCGCCAGGGCTAATGGACATATTTTTAATGTGGGAAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTCAGGTTTATTCAAAGGTAAGTGGAGAAGCACCTCTGGAAAAACCTACTATTGATGTGAGCTCCAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATTCCTGACATGACCATAATTAATAGGCAGCTTGGCTGGAATCCTAAAACCTCACTTTGGGACCTGCTTGAATCAACTCTCACCTATCAGCACAGGACTTATGCTGAAGCCGTTAAGAAAGTCATTGCAAAGCCCGTGGCAAGTTAA 1164 0.4674 MASSRVDLDGNPIKPITICMIGAGGFIGSHLCEKLMSETPHSVLALDVYNDKIKHLLEPHTLPWASRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTQVYSKVSGEAPLEKPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKKVIAKPVAS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1513 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 370 IPR036291 -
Gso12g1513 387 PANTHER - 4 386 - -
Gso12g1513 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
Gso12g1513 387 Gene3D - 16 379 - -
Gso12g1513 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 4 386 - -
Gso12g1513 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1513 Gso-Chr12 38514410 38517528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1513 16 382 Miscellaneous Gene Families AT1G02000 21.608 1.53e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1513 K12449 - gmx:100792879 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1513 12 38514410 38517528 Gso12g0684 12 6751655 6754421 PCT
Gso12g1513 12 38514410 38517528 Gso11g1432 11 16561390 16564405 PCT
Gso12g0684 12 6751655 6754421 Gso12g1513 12 38514410 38517528 PCT
Gso11g1432 11 16561390 16564405 Gso12g1513 12 38514410 38517528 PCT