Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1512 ATGGGGTCTTCTAGTTATTTCTTCACTTCCTTGCTTCTGGTTGTAGTGTTCAATCTGGCTAAAGGGCAGCCTCTGGTCCCTGCATTGTTCATATTTGGGGACTCTGTGGTTGATGTGGGAAATAATAACCACTTATACACCATTGTTAAAGCAAACTTCCCTCCTTATGGAAGAGACTTAAAGAATCACAATCCAACAGGGAGGTTTTGCAATGGAAAGCTTGCGTCAGATTACACAGCTGAAAACCTTGGATTTACCTCTTACCCCCCAGCTTACCTCAACTTAAAGGCCAAAGGAAACAACCTCTTAAATGGTGCCAACTTTGCCTCAGCTGCTTCTGGCTACTATGATCCCACAGCCAAGTTATACCATGCAATTCCATTGAGCCAACAGCTGGAACACTACAAAGAGTGCCAGAATATATTGGTGGGAACAGTAGGGCAGTCTAATGCTTCATCAATTATATCTGGTTCTATATATCTTATCAGTGCTGGGAACAGTGACTTTATTCAGAACTATTATATAAATCCACTGCTTTACAAGGTTTACACTGCTGATCAATTCTCAGACATTCTCTTGCAAAGCTATGTCACTTTCATTCAGAATATATATGCACTTGGAGCAAGGAAGATTGGTGTGACAACATTACCTCCAATGGGTTGTTTGCCAGCAACCATCACTCTCTTTGGCTCTGATAGCAACCAATGTGTGGTTAAACTAAATAATGATGCTATTAACTTCAATAAGAAGCTAAACACCACATCTCAGAGCTTGCAAAAATCGCTTTCTGGTCTCAAATTGGCCATCCTTGATATCTACCAACCTCTCTATGACCTTGTCACTAAGTCTTCTGAAAATGGATTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACAGGCTTGCTAGAAACATCTGTGTTGTGCAATCAGAAGTCCATAGGAACATGTGCCAATGCATCTGAGTATGTATTTTGGGATGGTTTTCACCCGTCTGAGGCTGCAAACAAGGTTTTGTCTGATGACTTGCTGGCTGCTGGCATCTCTCTCATATCCTAA 1053 0.415 MGSSSYFFTSLLLVVVFNLAKGQPLVPALFIFGDSVVDVGNNNHLYTIVKANFPPYGRDLKNHNPTGRFCNGKLASDYTAENLGFTSYPPAYLNLKAKGNNLLNGANFASAASGYYDPTAKLYHAIPLSQQLEHYKECQNILVGTVGQSNASSIISGSIYLISAGNSDFIQNYYINPLLYKVYTADQFSDILLQSYVTFIQNIYALGARKIGVTTLPPMGCLPATITLFGSDSNQCVVKLNNDAINFNKKLNTTSQSLQKSLSGLKLAILDIYQPLYDLVTKSSENGFFEARKACCGTGLLETSVLCNQKSIGTCANASEYVFWDGFHPSEAANKVLSDDLLAAGISLIS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1512 350 Pfam GDSL-like Lipase/Acylhydrolase 29 339 IPR001087 GO:0016788
Gso12g1512 350 PANTHER GDSL ESTERASE/LIPASE EXL3 9 349 - -
Gso12g1512 350 SUPERFAMILY SGNH hydrolase 29 341 - -
Gso12g1512 350 PANTHER GDSL-MOTIF LIPASE 9 349 - -
Gso12g1512 350 CDD SGNH_plant_lipase_like 27 342 IPR035669 -
Gso12g1512 350 Gene3D SGNH hydrolase 18 346 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1512 Gso-Chr12 38508102 38509996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1512 24 341 Acyl Lipid Metabolism Gene Families AT4G10950 32.399 9.26e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1512 - - gmx:100792352 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1512 12 38508102 38509996 Gso11g3330 11 49094750 49096877 GST
Gso12g1512 12 38508102 38509996 Gso11g1436 11 16606767 16610240 PCT
Gso11g1436 11 16606767 16610240 Gso12g1512 12 38508102 38509996 PCT