Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0948 ATGGACAACTTCGAAGATGCTACAGAGCCAGTGAGTCCTAGTGGACGATTCTTCAACACCACGGTGCTATGTGCGTATGTTTTTGGCTTCTTAGAATCAGAAGTTCCAATTGAATTCTCTCAAGCCAAGTATTTGTTCGAAGATGTCTTTCTACCCGTCAATCCACACTTTTCTTCCATAATGGTGAGAGATGAAGAAGGAGAAATGAAATGGAAAAGGGTAGAGGTGAAGTTCGAAGATCACGTAAAGATTCCAACGTTCCCCGAAAACGAGTCACTAGAATTGTATGACCAATATTTTGATGACTATGTGACAAAGATATTAATGGAAAGGACACCACAAGATAAACCACTTTGGGAAATTCATGTGATCAAATACCCTACAAGCAATGCTGCTGGCACCTTAATATTCAAACTTCACCATGCACTTGGAGATGGTTACTCCCTAGTGGGTGCTCTTCTCTCTTGTCTTCAGAGAGCTGATGACCCTTCTCTTCCTCTTTCGTTTCCCTCCCGAAAATCCTCGGCATCTTCATCTCCTTCCAAGAAGGGCTTCTTCAGGTTGTTCTCTTCAACTTTGTTCTCCTTTTTTAACTCTATTTCGGATTTTGGATGGAGCATAGTGAAAAGCTCAATTGTTGAAGATGATGAGACACCCATAAGGAGTGGTGAGGAAGGTGTTGAGTCTCTGCCTTGTGTGATATCAAACATATCCTTTGATCTTGATCAAGTGAAGAAAATCAAGTCCAAGCTTGGAGTGACAGTAAACGATGTAATTACTGGGGCAATTTTCTATGGGATTAGGCTGTACATGCAAGAGATTGACAATAAGGCAGGCAAAGCAAATTCCACAGGATTGGTGATGCTTAGTACTAGAAACATTGGAAGTTACCAATCAATCCAAGAAATGATGAAGGCTGATTCCAAATCTCCTTGGGGGAATCATATTTCTTTCTTGCACGTACCCATACCTAAGCTAAGCCAAGCCAGCCTATCCAACCCCCTTGAATTTGTTTGGAAAGCCCAAAAAATAATCAAGAGGAAGAGAAAGTCTTTCACTGTTTTTCTCATTGAATGGCTTTTAGATATGGAGCTGAAATTAAGAGGACACGAGGCCGTGGCTAAACATATCTATGGGACACTAAGAAACTCAAGTGTTGTCGTATCCAACTTGATTGGACCAATAGAACCTATGGCTTTGGCAAATCATCCTGTGAAAGGCTTGTATTTCACAATGACTGGTGGACCCGAGAGTATAAATATTGCAGTTATAAGCTACACAAAAACGTTAAGAATTACCTTAAAAACACAGAAAGGGTTTATTGATGAGAAGAAGTTCAAATTCTGCGTGGTGAAAGCCTTTGAGGTCATATCCAAAGCAGCAATGGAGATACCCAACAAAATCAGAGGTTAA 1413 0.4062 MDNFEDATEPVSPSGRFFNTTVLCAYVFGFLESEVPIEFSQAKYLFEDVFLPVNPHFSSIMVRDEEGEMKWKRVEVKFEDHVKIPTFPENESLELYDQYFDDYVTKILMERTPQDKPLWEIHVIKYPTSNAAGTLIFKLHHALGDGYSLVGALLSCLQRADDPSLPLSFPSRKSSASSSPSKKGFFRLFSSTLFSFFNSISDFGWSIVKSSIVEDDETPIRSGEEGVESLPCVISNISFDLDQVKKIKSKLGVTVNDVITGAIFYGIRLYMQEIDNKAGKANSTGLVMLSTRNIGSYQSIQEMMKADSKSPWGNHISFLHVPIPKLSQASLSNPLEFVWKAQKIIKRKRKSFTVFLIEWLLDMELKLRGHEAVAKHIYGTLRNSSVVVSNLIGPIEPMALANHPVKGLYFTMTGGPESINIAVISYTKTLRITLKTQKGFIDEKKFKFCVVKAFEVISKAAMEIPNKIRG* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0948 470 Pfam WS/DGAT C-terminal domain 312 457 IPR009721 GO:0004144
Gso12g0948 470 Pfam Wax ester synthase-like Acyl-CoA acyltransferase domain 101 259 IPR004255 GO:0004144|GO:0045017
Gso12g0948 470 PANTHER O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN 2 468 IPR045034 GO:0008374|GO:0045017
Gso12g0948 470 PANTHER O-ACYLTRANSFERASE WSD1-LIKE PROTEIN 2 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0948 Gso-Chr12 11416196 11420297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0948 1 449 Acyl Lipid Metabolism Gene Families AT5G16350 29.783 1.03e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0948 - - gmx:100816273 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0948 12 11416196 11420297 Gso12g0948 12 11416196 11420297 ECH
Gso12g0948 12 11416196 11420297 Gso6g2391 6 45519202 45522736 GST
Gso11g3122 11 47119251 47123451 Gso12g0948 12 11416196 11420297 PCT
Gso12g0948 12 11416196 11420297 Gso11g3122 11 47119251 47123451 PCT