Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0789 ATGGCGGAAACCCTAAGCCCCAACCCCACGATGGATCAGAAGCAGAGGCTCCGCATCCTGTCCCCGACCAGCCCCTTCATCCTGGGCTCCAACGACGACAAGCTCGAACGCGCCCAGGCACGCGACGCACGCGCCACCGCCATCCGCCGCAAGAGCCTCGCCCTCAATCAGCCCCTTCAGCCCAACTCCGATCCCTGCCTCAACAAACAGCAGATCATCGACTTGTTCCAAAACTGCATCAAACTCGCCAGCGAAAACAAAATTAATCAGAAAAATACGTGGGAGTTGAACCTGATTGACCACCTCACTGATATCATCAAGGCGGAAGAAGAAAATGATGCGGAGACTAATTTTCAAAAGGCAAGCTGCACTCTTGAGGCTGGAGTCAAAATTTATTCATTAAGGGTGGATTCAGTGCATTCTGAGGCATATAAAGTTCTTGGTGGGATGAATAGAGCAGGCCAAGAAGCTGAGGAAGATACTACCCTGGATGTTGTTAATATTGAAAGTGGACAAGTAGAAAGCAGGAAAGAAACGAGCAAAAAGTTGTCACCTTTGTCAACATTGGAATCATCTTTTGAGGCACTTAATGTAAAGAAGTTCGATGCTGCATTTGTCGTGGATCCTCTCTATCGCCAAACAACAGCAAAATTCGATGAAGGTGGAGCCAAGGGTCTTTTAATGAATAATCTCGGAGTATATGGTGACTGTAGGGTGCTCTTTGATTCACAAGAAGTTCCTGCTAAGTGTATGGCAAGCCAAAATCAATCTGATATTTCAGATACTATTGATCTTTCCTTTGCCAAAGATTGTATTGATCAAATGGTGTTGGACATGCGTGTAAAGGATGAAATTTCTCCAAGTCTCAGGACTATAGTAAACCAATTTGATGAAAGTAACAGAAGACCCGCTGATATTCAACTTCAAGGCCAGAATTCAGCTGAAGATCTTGACAATGCTGATAATAATGAAAATGGTTTTTACAGAGAAGAATATGAGAACTGCATGGCCTGGAGTGATGATCGTGATGACCACACAGTTGTTGCCGATCCAGGTTATAATGATGCAGATCCAAGTTTTCCCAGTTACCCTCAGGACAATGATGAGCCATTTCCTTCCCCAGAAATTGATATGGATGACAGATTTGAAAATGTTGACGGGTATTTATTTTTGAGTCTGGGTTTTAGTTCAAAACAAAATGCATGGGCAGGGCCTGATCATTGGAAGTATCGAAAATCCAAAGTCTCAGAGGTTCATCCTACTTCTGAAGATGGGTCGACCCTAAAAAGTAGACAGCCAAAGAGTAAGAGACAAACTGAAGTTGATTTAAATTTCACAAATTCTCTTGAGAAAAAAATGCTAGATACATTTTCTCCTCCCAAGAATCCCAAATTGTTACTGCTTCCTGAAAGCAGATTACCTTGCAATACAAAACTTCCTGAGGATTGTCACTATCAGCCAGAAGATCTTGTCAAGTTATTTCTTCTGTCTAATGTAAAGTGTCTCGGGAGGAAGGCAAACAGGTTCTCAGATGGATCTAGAGAACAATCCGATGAATATGAATCATTCCCTTCGTGGGATAATGGAAGTGTTTGTGGGGATGACGCTGGTGACTACGGAGGTGATCTTCATAGTGACATGGAGGACACCGACACTCTTGTTACTCAGCCTCGTCAGGTCAGTAAAATTGAAGTCCAGTATGACAAGACTTCCAAACAAGTCGATGTTCATGCACTAAAAATTACTCTTTGGGACCATGTTCAAGAATCTGTTAAACTTCCTTTAGAGGGTCAAAAAGATACCTTATCTTTCAGGAATATATTAGCCAACTTTCCTAGCGAATGCAATGCTGCTGCAACAATTAGTGACATCTCTCCTCATCTGTGCTTCATATGTCTATTGCATTTGGCAAACGAGAAAGGATTGAGCATTCAAAACTCCCCTAATTTGGATGATCTTGCCATACTGTTTCCACAAGTTGCTGATTCTATGAGGGGAACAGTTTAG 2007 0.427 MAETLSPNPTMDQKQRLRILSPTSPFILGSNDDKLERAQARDARATAIRRKSLALNQPLQPNSDPCLNKQQIIDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEEENDAETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEEDTTLDVVNIESGQVESRKETSKKLSPLSTLESSFEALNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGDCRVLFDSQEVPAKCMASQNQSDISDTIDLSFAKDCIDQMVLDMRVKDEISPSLRTIVNQFDESNRRPADIQLQGQNSAEDLDNADNNENGFYREEYENCMAWSDDRDDHTVVADPGYNDADPSFPSYPQDNDEPFPSPEIDMDDRFENVDGYLFLSLGFSSKQNAWAGPDHWKYRKSKVSEVHPTSEDGSTLKSRQPKSKRQTEVDLNFTNSLEKKMLDTFSPPKNPKLLLLPESRLPCNTKLPEDCHYQPEDLVKLFLLSNVKCLGRKANRFSDGSREQSDEYESFPSWDNGSVCGDDAGDYGGDLHSDMEDTDTLVTQPRQVSKIEVQYDKTSKQVDVHALKITLWDHVQESVKLPLEGQKDTLSFRNILANFPSECNAAATISDISPHLCFICLLHLANEKGLSIQNSPNLDDLAILFPQVADSMRGTV* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0789 668 PANTHER CONDENSIN COMPLEX SUBUNIT 2 1 661 IPR022816 GO:0000796|GO:0007076
Gso12g0789 668 Pfam Condensin complex subunit 2 545 655 IPR022816 GO:0000796|GO:0007076
Gso12g0789 668 Pfam Condensin complex subunit 2 25 513 IPR022816 GO:0000796|GO:0007076
Gso12g0789 668 PANTHER CONDENSIN COMPLEX SUBUNIT 2 1 661 - -
Gso12g0789 668 MobiDBLite consensus disorder prediction 414 441 - -
Gso12g0789 668 PIRSF Condensin_H 541 658 IPR022816 GO:0000796|GO:0007076
Gso12g0789 668 PIRSF Condensin_H 1 542 IPR022816 GO:0000796|GO:0007076
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0789 Gso-Chr12 8225180 8230857 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0789 K06676 - gmx:100793772 1322.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0789 12 8225180 8230857 Gso12g0789 12 8225180 8230857 ECH
Gso12g0789 12 8225180 8230857 Gso6g2532 6 47053110 47058562 GST
Gso12g1613 12 39692630 39697796 Gso12g0789 12 8225180 8230857 PCT
Gso12g0789 12 8225180 8230857 Gso12g1613 12 39692630 39697796 PCT