Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0661 ATGCAGCTAGCTGTGGCGGCCAACGCTGTCGTTTCACCGTCGCCGTTCCGACCTCATCCCCTTCTCCGGTCATCCTTCTCCGGCGTCTCCGTTAAGCTCACTCCCCAATCCATAACGTTTTCACGCTTGAAGCCCCTCACCGTCTTCGCCGCCACCAAGAAGGCCGTCGCTGTCCTCAAGGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTACATGAGTATGGTGATACCACAAATGGGTGTATATCAACAGGAGCACATTTTAATCCTAATAACTTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGAGGGGGTTGCAGAGGCTACAATTGTGGATAATCAGATACCACTCTCTGGCCCTAATTCAGTAGTTGGAAGAGCCTTGGTGGTCCATGAGCTTGAGGATGACCTTGGAAAGGGTGGGCATGAACTCAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCGTGTGGTGTGGTTGGTTTGACTCCAGCATAA 615 0.5268 MQLAVAANAVVSPSPFRPHPLLRSSFSGVSVKLTPQSITFSRLKPLTVFAATKKAVAVLKGTSAVEGVATLIQEDDGPTTVSVSITGLTPGLHGFHLHEYGDTTNGCISTGAHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPA* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0661 204 CDD Cu-Zn_Superoxide_Dismutase 53 196 IPR001424 GO:0006801|GO:0046872
Gso12g0661 204 SUPERFAMILY Cu,Zn superoxide dismutase-like 54 201 IPR036423 GO:0006801|GO:0046872
Gso12g0661 204 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 94 104 IPR018152 -
Gso12g0661 204 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 188 199 IPR018152 -
Gso12g0661 204 PRINTS Cu-Zn-superoxide dismutase family signature 94 116 IPR001424 GO:0006801|GO:0046872
Gso12g0661 204 PRINTS Cu-Zn-superoxide dismutase family signature 130 139 IPR001424 GO:0006801|GO:0046872
Gso12g0661 204 PRINTS Cu-Zn-superoxide dismutase family signature 149 171 IPR001424 GO:0006801|GO:0046872
Gso12g0661 204 PRINTS Cu-Zn-superoxide dismutase family signature 174 200 IPR001424 GO:0006801|GO:0046872
Gso12g0661 204 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 51 202 IPR024134 -
Gso12g0661 204 PANTHER SUPEROXIDE DISMUTASE [CU-ZN] 1 51 202 - -
Gso12g0661 204 Gene3D Superoxide dismutase, copper/zinc binding domain 49 203 IPR036423 GO:0006801|GO:0046872
Gso12g0661 204 Pfam Copper/zinc superoxide dismutase (SODC) 65 199 IPR001424 GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0661 Gso-Chr12 6453833 6461747 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0661 K04565 - gmx:100784752 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0661 12 6453833 6461747 Gso11g1157 11 10372647 10375150 GST
Gso12g0661 12 6453833 6461747 Gso11g1454 11 16870774 16874335 GST
Gso15g0315 15 2849628 2851799 Gso12g0661 12 6453833 6461747 PCT
Gso11g3490 11 50785462 50787501 Gso12g0661 12 6453833 6461747 PCT
Gso12g0661 12 6453833 6461747 Gso15g0315 15 2849628 2851799 PCT
Gso12g0661 12 6453833 6461747 Gso11g3490 11 50785462 50787501 PCT