Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0622 ATGTATAAGAACCAGCTGCAGGAGCTGGCACAGCGGAGCTGCTTCAACCTGCCTTCGTACACGTGCATTCGGGAAGGTCCTGATCACGCGCCGCGCTTCAAGGCCACCGTTAACTTTAACGGCGAGATCTTCGAGAGCCCTCATTACTGTTCAACGCTCCGTCAGGCGGAGCACTCCGCCGCCGAGGTGGCGCTCAATTCCCTCTCTAACCGTGCTCCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGGGTGTACAAGAACCTCTTGCAGGAAATTGCGCAGAGGGTAGGGGCGCCGTTGCCGCAGTATTTTACATTCAGGTCAGGGTTAGGACATTTACCTGTTTTTACGGGGACAGTGGAGTTAGCTGGAATCATGTTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCGGAGAAAAATGCAGCTATGGCCGCATGGTCTTCTCTAAAGCAATTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCCGAGAACAATGACGAACTAGAACAGATCACTATAGCACGGGCCTTACTGAACTACAGACTGAAGGAAAAGATTTCAATGTCAAATTCAAATGCTCCAGTTCCATTTCCAAAGAAGTTTCAGATTCAAAATCCCAGGCCAACCAGTCCTCAGCCCCCACCTGCTGCTACATCAAAGATTCTTCCCTTAATTTGCCAAAAGGCAGCTCCTCGAAGCAGGCATCTAGTAGGAGCATCTCCAGCACGAGCTTCCTGCGACAATTCTGCGATGCCACAGCTTTCTGCTACACCAGAAAGCCGAGGAATCCGTCGCCCTAAGTTCCCTGCAGCCGGAGCAGCACCTTATGTTCCCATTAGACAAATGAGGCCTTGTCAGGGGATGGCACCTCCGGTGACGATAAGGACTGCAATACCTGTATTCTCCCCACCGCCAGCAGCAGCTGCAGTGTCCCATCAAGTACTACGAGCTCCTCATGTACGAGTTGCACCTCCGGTCACTATTCGGCAAGCTGTTCCAGTATTTGCTACTCCACCTCCTCCGATTCGAAAAGATGAACCTGTTCCCATCCCAAAAGACGAACCACCAACCATTAGTGCCCCTAGCCCGGAAGACAAACTGCCAGCTAAAACGCCAGAGGCAGAGACCAAGACTGAGAACATTCCACCTAAACCTGACATGGTAAAGAGCTTGGAGCAGCTGAAAATTTGA 1206 0.5141 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIARALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKAAPRSRHLVGASPARASCDNSAMPQLSATPESRGIRRPKFPAAGAAPYVPIRQMRPCQGMAPPVTIRTAIPVFSPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFATPPPPIRKDEPVPIPKDEPPTISAPSPEDKLPAKTPEAETKTENIPPKPDMVKSLEQLKI* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0622 401 PANTHER RNA BINDING PROTEIN, PUTATIVE-RELATED 1 368 - -
Gso12g0622 401 MobiDBLite consensus disorder prediction 196 211 - -
Gso12g0622 401 Gene3D - 84 155 - -
Gso12g0622 401 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Gso12g0622 401 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Gso12g0622 401 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Gso12g0622 401 SMART DRBM_3 2 69 IPR014720 -
Gso12g0622 401 SMART DRBM_3 88 154 IPR014720 -
Gso12g0622 401 Gene3D - 2 83 - -
Gso12g0622 401 PANTHER - 1 368 - -
Gso12g0622 401 MobiDBLite consensus disorder prediction 373 387 - -
Gso12g0622 401 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Gso12g0622 401 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Gso12g0622 401 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Gso12g0622 401 MobiDBLite consensus disorder prediction 196 222 - -
Gso12g0622 401 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Gso12g0622 401 MobiDBLite consensus disorder prediction 342 401 - -
Gso12g0622 401 MobiDBLite consensus disorder prediction 247 272 - -
Gso12g0622 401 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0622 Gso-Chr12 5819639 5823207 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0622 - - gmx:100812728 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0622 12 5819639 5823207 Gso11g1507 11 17595763 17599533 GST
Gso11g3377 11 49663874 49666800 Gso12g0622 12 5819639 5823207 PCT
Gso12g0622 12 5819639 5823207 Gso11g3377 11 49663874 49666800 PCT