Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1507 ATGTATAAGAACCAGCTGCAGGAGCTGGCACAGCGGAGCTGCTTCAACCTGCCTTCGTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGCGCTTCAAGGCCACCGTGAACTTTAACGGCGAGATCTTCGAGAGTCCTCACTACTGTTCAACGCTCCGTCAGGCGGAGCACTCCGCCGCCGAGGTCGCTCTCAATTCCCTCTCCAATCGTGCTCCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGAGTGTACAAGAACCTCTTGCAGGAAATTGCACAGAGGGTAGGGGCGCCGTTGCCCCAGTATTTTACATTCAGGTCAGGGTTAGGACATTTACCTGTTTTTACTGGCACAGTAGAGTTAGCTGGAATCATGTTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCGGAGAAAAATGCAGCTATGGCAGCTTGGTCTTCTCTAAAGCAATTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCCGAGAACAATGACGAACTAGAACAGATCACTATAGCACGGGCCTTGCTGAACTACAGACTGAAGGAAAAGATTTCAATGTCAAATTCAAATGCTCCAGTTCCATTTCCAAAGAAGTTTCAGATTCAAAATCCCAGGCCAACCAGTCCTCAGCCTCCACCTGCCACCACATCAAAGATTCTTCCTTTAATTTGCCAAAAGGGAGCTCATCGAAGCAGGCATCTAGTAGCAGCATCTCCGGCACCAGCTTCCAGCGACAATTCTGTGATGCCACAACTTCCAGCTACACCAGATAGCCGAGGAATCCGTCGCCCTAAGTTCCCTGCAGCCGGAGCAGCACCTTATGTTCCCATTAGACAAATGAGGCCTTGTCAGGGGATGGCACCTCCAGTGACGATAAGGACTGCAATACCTGTATTCTCCCCACCACCACCGCCAGCAGCAGCTGCAGTGTCCCATCAAGTACTACGAGCTCCTCATGTACGAGTTGCTCCTCCAGTCACTATTCGGCAAGCTGTTCCGGTATTTGCTGCTCCACCTCCACCAGTCCGAAAAGATGAACCTGTTCCCATCCCAAAAGACGAACCTGTCGCCGTCCCTAAAGACGAATCACCAACCATTAGTGCCCCTAGCTTGGAAGACAAACTGCCAACTAAAACTCCCGAGACAGAGACCAAGACTGAGAACATTCCACCTGAACCTGAGACAGTGCAGAGCTTGGAGCAGCTGAAAATCTGA 1236 0.5121 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIARALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQPPPATTSKILPLICQKGAHRSRHLVAASPAPASSDNSVMPQLPATPDSRGIRRPKFPAAGAAPYVPIRQMRPCQGMAPPVTIRTAIPVFSPPPPPAAAAVSHQVLRAPHVRVAPPVTIRQAVPVFAAPPPPVRKDEPVPIPKDEPVAVPKDESPTISAPSLEDKLPTKTPETETKTENIPPEPETVQSLEQLKI* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1507 411 MobiDBLite consensus disorder prediction 396 411 - -
Gso11g1507 411 MobiDBLite consensus disorder prediction 344 411 - -
Gso11g1507 411 MobiDBLite consensus disorder prediction 196 211 - -
Gso11g1507 411 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Gso11g1507 411 MobiDBLite consensus disorder prediction 196 223 - -
Gso11g1507 411 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Gso11g1507 411 Gene3D - 84 155 - -
Gso11g1507 411 SMART DRBM_3 2 69 IPR014720 -
Gso11g1507 411 SMART DRBM_3 88 154 IPR014720 -
Gso11g1507 411 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Gso11g1507 411 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Gso11g1507 411 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Gso11g1507 411 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Gso11g1507 411 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Gso11g1507 411 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Gso11g1507 411 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 411 - -
Gso11g1507 411 Gene3D - 2 83 - -
Gso11g1507 411 PANTHER - 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1507 Gso-Chr11 17595763 17599533 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1507 - - gmx:100816445 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1507 11 17595763 17599533 Gso11g1507 11 17595763 17599533 ECH
Gso12g0622 12 5819639 5823207 Gso11g1507 11 17595763 17599533 GST
Gso11g3377 11 49663874 49666800 Gso11g1507 11 17595763 17599533 PCT
Gso11g1507 11 17595763 17599533 Gso11g3377 11 49663874 49666800 PCT