LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g3377	ATGTACAAGAACCAGCTTCAAGAGCTGGCCCAGCGGAGCTGCTTCAACCTGCCTTCCTACACGTGTATTCGGGAAGGTCCCGATCACGCGCCAAGGTTCAAGGCCACCGTCAACTTTAACGGCGAGATCTTCGAGACCCCTCACTACTGCTCCACTCTCCGTCAGGCCGAACACTCCGCCGCCGAAGCCGCTCTCAATTCCCTCTCCCACCGTGGCCCCTCCCATTCCCTCGCCGCTAAGATCCTCGATGAGACTGGAGTGTACAAGAACCTTCTACAGGAAATTGCGCAAAGGGTAGGAGCTCCATTGCCTCATTACACAACGTACAGGTCAGGCTTAGGACATTTACCTGTTTTTACCGGGATAGTAGAACTGGCTGGAATCACGTTCACTGGTGAACCTGCCAAGAATAAGAAACAAGCTGAGAAAAATGCAGCTATGGCAGCTTGGTCCGCTTTAAAACAATTGGCAAAAGAGACTGCAAGCTCCTCAACTGAACCAGAGAACAATGACGAAGTGGAACAGATTACAATAGCGCGGGCTTTACTGAACTACCGTTTGAAGGAAAAGATGACTATGTCTAATCCAAATGCTCCCCTTCCATTTCATGAAAGGTTTCAGATTCAAAATCCAAGGCCAATCAGTTCTCAACCGCCCCCAGCCACTTCATCAAAGATCCTTCCCCTAATTTGCCAGAAGACAGCACCTCGAAGTAAGCCTTCATTGGCAACAACAACAACAAATGAAAGTCCTGGAAGCAGGCATCCACAGGCAGCAGTGGCAGTGACCAGTGACAATTCCAACCTGCCACAACAATCTTGTTCTCTAGAATGCCGAGCGACCCGTCCCCTGAAGTTTCCTGCAGCAGGAGCAGCACCTTATGTTCCCATTCGACAAATGAGACCATCTTGCCAACGGATTGCACCTCCGGTGACTATAAGGACAGTTGTACCTGCATTCGCTGCACCACCTGCCTCGGTGCCCCATCCTGTTATACGGGCTCCTCCAGTACGAGTTGCTCCTCCAGTCACTATTCGACAAGCTGTTCCATTATATGCTGCTCCCAAACAACAAGAAGATCTACCAACTGCTAATGCCTCGGGCCAGCAAGACAAACTGCCCGTTAAAATTCAGGAGATGGACAAGGCTGAGAACATTACACCAGAATCAAACTATGCGTAG	1182	0.5017	MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSAAEAALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDEVEQITIARALLNYRLKEKMTMSNPNAPLPFHERFQIQNPRPISSQPPPATSSKILPLICQKTAPRSKPSLATTTTNESPGSRHPQAAVAVTSDNSNLPQQSCSLECRATRPLKFPAAGAAPYVPIRQMRPSCQRIAPPVTIRTVVPAFAAPPASVPHPVIRAPPVRVAPPVTIRQAVPLYAAPKQQEDLPTANASGQQDKLPVKIQEMDKAENITPESNYA*	394

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g3377	393	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	1	70	IPR014720	-
	Gso11g3377	393	Pfam	Double-stranded RNA binding motif	88	152	IPR014720	-
	Gso11g3377	393	Pfam	Double-stranded RNA binding motif	2	68	IPR014720	-
	Gso11g3377	393	Gene3D	-	2	83	-	-
	Gso11g3377	393	SUPERFAMILY	dsRNA-binding domain-like	88	159	-	-
	Gso11g3377	393	SUPERFAMILY	dsRNA-binding domain-like	2	68	-	-
	Gso11g3377	393	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	87	155	IPR014720	-
	Gso11g3377	393	PANTHER	DOUBLE-STRANDED RNA-BINDING PROTEIN 2	1	370	-	-
	Gso11g3377	393	CDD	DSRM_AtDRB-like_rpt2	86	154	IPR044451	GO:0003725
	Gso11g3377	393	Gene3D	-	84	155	-	-
	Gso11g3377	393	MobiDBLite	consensus disorder prediction	237	266	-	-
	Gso11g3377	393	MobiDBLite	consensus disorder prediction	234	266	-	-
	Gso11g3377	393	CDD	DSRM_AtDRB-like_rpt1	1	69	IPR044450	GO:0003725
	Gso11g3377	393	PANTHER	-	1	370	-	-
	Gso11g3377	393	SMART	DRBM_3	88	154	IPR014720	-
	Gso11g3377	393	SMART	DRBM_3	2	69	IPR014720	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g3377	Gso-Chr11	49663874	49666800	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g3377	-		-	gmx:100814005	751.125

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso11g3377	11	49663874	49666800	Gso12g0622	12	5819639	5823207	PCT
	Gso11g3377	11	49663874	49666800	Gso11g1507	11	17595763	17599533	PCT
	Gso12g0622	12	5819639	5823207	Gso11g3377	11	49663874	49666800	PCT
	Gso11g1507	11	17595763	17599533	Gso11g3377	11	49663874	49666800	PCT