Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0616 ATGGAGTTGATCTACCTACTCTATCTGGTTCCAACGTTGTACGCGTGTTTCCTCATATGGAAGATGTTGGACGAGAGAAGGGACAGGGAGTGTTACATCCTAAACTACCAATGCTACAAGCCCCCCAACGACAGAATGCTCGGCACCGAGTTCTGTGGCAAGCTTATCAGACGCACCGAAAACCTGGGCCCCAGCGAGTACCGCTTCCTCCTCAAAGCCATCGTCAGCTCCGGCATCGGCGAACAAACGTACGCCCCAAGAAACATCTTCGAGGGCCGCGAGGCCACTCCCACGTTGCGCGACGGCATCGGAGAAATGGAGGAGTTCTTTCACGACAGCATTGGAAAACTCCTCGCGAAATCTAACGTCTCCCCCTCCGAGATCGACGTCCTCGTCGTCAACATCTCCATGCTCGCCACCGTCCCTTCCCTCTCCTCTCGAATCATCAACCACTACAAAATGCGCCACGACGTCAAGGTCTACAACCTCACCGGCATGGGCTGCAGCGCCAGTCTCATCTCAATGGACATAGTCAAATGCATTTTCAAGACGCAGCGCAACAAGCTCGCGCTGCTGATCACTTCGGAGTCTTTAAGTCCAAATTGGTATACGGGGAGCGACAGATCCATGATTCTCGCGAACTGTCTCTTCCGTTCTGGCGGCTGCGCCATTCTTTTGACGAACAAAAGATCGTTAAAGGACAAAGCCATGCTGAGGTTGAAGTGTTTGGTGAGAACGCATCACGGTGCTAGAGAAGAAGCTTATGGCTGCTGTACCCAGCAGGAAGATGATCAAGGAAGGCTCGGATTTCATCTTGGAAAGACTCTTCCCAAGGCTGCCACCCGAGCCTTCGTTGATAATCTTCGAGTCATAGCACCCAAGATATTACCTATCCGTGAGTTGCTCAGGTTTTTGTTCGTGTCCATTATTAAAAAAATCAACAAGAGTAGTAACGCTCCCAAGTCCGTTGCGAGCACCGGAGCGACAAAATCACCATTGAACTTCCGAACCGGGGTGGATCATTTTTGCCTTCACACCGGAGGAAAGGCGGTGATCGACGGGATCGGAATGAGCTTGGATCTGAGCGAGTATGACCTGGAACCGGCGAGGATGACGCTGCACCGGTTCGGGAACACGTCGGCGAGTAGCTTGTGGTACGTGCTATCGTACATGGAGGCGAAGAAGAGGCTGAAGAAGGGGGACACGGTGTTCATGATAAGCTTTGGTGCGGGCTTTAAATGTAACAGCTGTTTGTGGGAGGTGATGAAGGACTTGGGGGAGGCGAATGTGTGGGACGATTGCATTGATGAGTACCCACCAGAGTCATTGGCCAACCCCTTCATGGAGGCCTATGGTTGGATCAATGAAGTTGATGATCCGTACACTTACGAACATCTTCCAGAATTTCTCAAGTGA 1416 0.5177 MELIYLLYLVPTLYACFLIWKMLDERRDRECYILNYQCYKPPNDRMLGTEFCGKLIRRTENLGPSEYRFLLKAIVSSGIGEQTYAPRNIFEGREATPTLRDGIGEMEEFFHDSIGKLLAKSNVSPSEIDVLVVNISMLATVPSLSSRIINHYKMRHDVKVYNLTGMGCSASLISMDIVKCIFKTQRNKLALLITSESLSPNWYTGSDRSMILANCLFRSGGCAILLTNKRSLKDKAMLRLKCLVRTHHGAREEAYGCCTQQEDDQGRLGFHLGKTLPKAATRAFVDNLRVIAPKILPIRELLRFLFVSIIKKINKSSNAPKSVASTGATKSPLNFRTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLSYMEAKKRLKKGDTVFMISFGAGFKCNSCLWEVMKDLGEANVWDDCIDEYPPESLANPFMEAYGWINEVDDPYTYEHLPEFLK* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0616 471 CDD CHS_like 19 419 - -
Gso12g0616 471 SUPERFAMILY Thiolase-like 243 422 IPR016039 GO:0016746
Gso12g0616 471 PANTHER 3-KETOACYL-COA SYNTHASE 1 460 - -
Gso12g0616 471 Gene3D - 75 421 IPR016039 GO:0016746
Gso12g0616 471 SUPERFAMILY Thiolase-like 18 231 IPR016039 GO:0016746
Gso12g0616 471 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 339 420 IPR013747 -
Gso12g0616 471 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Gso12g0616 471 PANTHER 3-KETOACYL-COA SYNTHASE 1 460 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gso12g0616 471 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 453 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0616 Gso-Chr12 5726826 5728759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0616 19 470 Acyl Lipid Metabolism Gene Families AT2G28630 69.281 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0616 K15397 - gmx:100810048 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0616 12 5726826 5728759 Gso11g1226 11 11121325 11123338 GST
Gso15g0372 15 3351352 3353443 Gso12g0616 12 5726826 5728759 PCT
Gso11g3432 11 50285016 50287205 Gso12g0616 12 5726826 5728759 PCT
Gso12g0616 12 5726826 5728759 Gso15g0372 15 3351352 3353443 PCT
Gso12g0616 12 5726826 5728759 Gso11g3432 11 50285016 50287205 PCT