Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3432 ATGGAGTTCCTCACTTTACTTTATGGTGCTATGGCATTGTACTTGTGTTTCCTGATCTGGAAACTGTTTGATCAGAGAAGGGACCAAGAGAGTTACATATTGGACTACCAACTTTACAAGCCAAGCGATGAAAGAAAGCTTGGAACTGAACTCTGTGGGAAGATCATAGGGAGGAACAAGCAATTGGGTCTGAACGAGTACAAGTTCCTCCTCAAGGCCATTGTCAACTCTGGCATTGGTGAGGAAACTTATGCCCCAAGAAACGTCATCGAGGGCCGAGAGACGAATCCAACATTGGATGATAGTGTCACAGAAATGGAGGAGTTTTTCCATGACAGCATTGCCAAACTCCTCGAAAGGTCAGGGATTTCCCCCTCACAGATCGATGTGCTTGTGGTGAATGTGTCCATGTTCGCTGTAGTTCCTTCCTTAACTTCAAGAATCATTAACCACTACAAGATGAGGGAGGACATAAAGGCTTACAACCTCACTGGGATGGGGTGCAGTGCTAGCCTCATTTCCTTGGACATCATAAGGAACATTTTCAAGTCACAAAAGAACAAGATTGCTCTTTTGGTGACTTCCGAGTCTCTAAGTCCAAACTGGTACAATGGCAACGACAGATCAATGATTCTCGCCAACTGTTTGTTCAGGACGGGTGGATGTGTCATTCTCTTGACAAACAAAAGGTCCTTGAAGCAAAGGGCCATGTTCAAGTTGAAGTGCTTGGTGAGGACTCATCATGGTGCTAAAGAAGATGCCTATAGTTGCTGCAATCAGAAGGAAGATGAGCAAGGCAATCTTGGGTTTTACCTTGCCAAGAATCTCCCCAAGGCAGCAACAAGGGCATTTGTTGAGAACCTAAGGATGTTGTCACCCAAGGTTTTGCCAACTAGGGAGCTTCTAAGGTTCATGATTGTGTCCCTCATAAAGAAACTGAGCCAAACTAGTTCCCTAAAGTCCTCAAGTGGTGGATCTAGCAAATCTAGTAAATCACCTTTAAACTTCAAGACTGGGGTAGAACATTTTTGTCTCCACACAGGAGGAAAGGCTGTGATAGATGGGATTGGAAAAAGCTTGGATCTTTGTGAGTATGATCTTGAGCCAGCAAGGATGACACTTCACCGTTTTGGTAACACTTCAGCAAGTAGCCTTTGGTATGTGCTAGGGTACATGGAGGCCAAGAAGAGGCTCAAGAAAGGTGACAGAGTACTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTAATGAAGGATCTTGGGGATCATACAAATGTGTGGAGTTACTGCATTGATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCATGGAGACCTTTGGTTGGATCAACAATGTCGAAGATGCAACCAACTTCAAACTTCCTGATTTGTTTCTCAAGTAA 1422 0.4451 MEFLTLLYGAMALYLCFLIWKLFDQRRDQESYILDYQLYKPSDERKLGTELCGKIIGRNKQLGLNEYKFLLKAIVNSGIGEETYAPRNVIEGRETNPTLDDSVTEMEEFFHDSIAKLLERSGISPSQIDVLVVNVSMFAVVPSLTSRIINHYKMREDIKAYNLTGMGCSASLISLDIIRNIFKSQKNKIALLVTSESLSPNWYNGNDRSMILANCLFRTGGCVILLTNKRSLKQRAMFKLKCLVRTHHGAKEDAYSCCNQKEDEQGNLGFYLAKNLPKAATRAFVENLRMLSPKVLPTRELLRFMIVSLIKKLSQTSSLKSSSGGSSKSSKSPLNFKTGVEHFCLHTGGKAVIDGIGKSLDLCEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGDRVLMISFGAGFKCNSCLWEVMKDLGDHTNVWSYCIDDYPPESLANPFMETFGWINNVEDATNFKLPDLFLK* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3432 473 CDD CHS_like 12 420 - -
Gso11g3432 473 SUPERFAMILY Thiolase-like 243 423 IPR016039 GO:0016746
Gso11g3432 473 Gene3D - 61 422 IPR016039 GO:0016746
Gso11g3432 473 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 340 421 IPR013747 -
Gso11g3432 473 PANTHER 3-KETOACYL-COA SYNTHASE 1 462 - -
Gso11g3432 473 SUPERFAMILY Thiolase-like 17 232 IPR016039 GO:0016746
Gso11g3432 473 PANTHER 3-KETOACYL-COA SYNTHASE 1 462 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gso11g3432 473 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Gso11g3432 473 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 455 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3432 Gso-Chr11 50285016 50287205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3432 19 472 Acyl Lipid Metabolism Gene Families AT2G28630 69.281 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3432 K15397 - gmx:100776947 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0372 15 3351352 3353443 Gso11g3432 11 50285016 50287205 GST
Gso11g3432 11 50285016 50287205 Gso12g0616 12 5726826 5728759 PCT
Gso11g3432 11 50285016 50287205 Gso11g1226 11 11121325 11123338 PCT
Gso12g0616 12 5726826 5728759 Gso11g3432 11 50285016 50287205 PCT
Gso11g1226 11 11121325 11123338 Gso11g3432 11 50285016 50287205 PCT