Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0551 ATGGAAATTGATCTTTCTCCCCAGTTGGCCAAGAAGGTGTATGAAAGCAATGGTGGGTCTTACCATGCATGGTCCCCTTCTGAGCTTCCCATGTTGCCTGAAGGGAACATTGGTGCTGCCAAACTAGCTCTTCAAAAAAATGGTTTTGCCCTTCCTTGTTACTCTGACTCTTCCAAGGTTGCATATGTTCTCCAAGGAAGTGGAGTTGCAGGAATTGTGCTCCCTGAATCAGAAGAGAAGGTGGTTGCAATTAAGAAGGGTGATGCTTTGGCACTCCCTTTTGGTGTGATAACCTGGTGGTACAACAAGGAGGACACTGAGTTGGTTGTTCTGTTCTTAGGTGACACTTCAAAAGCCCACAAGACTGGTGAATTCACTGATTTTTACCTAACTGGTTCCAATGGAATCTTCACTGGCTTCTCAACTGAGTTCGTGGGAAGGGCTTGGGACTTAGAAGAGAAGGATGTGAAGACCCTTGTTGGAAAACAATCAGGCAAGATCATTGTGAAGCTTGAAGGCAACATCAATCTTCCTGAGCCCAAAGAGGAACATAGAAAGGGCATGGCATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATTAAGAATGGTGGAAGGGTTGTGGTGTTGAACACCAAGAACCTTCCCTTGGTTGGTGAGGTTGGTCTAGGAGCAGACCTTGTGAGGCTGGATGGAAATGCCATGTGTTCTCCAGGATTCTCTTGTGATTCTGCCTTTCAGGTCACCTACATCGTCAGAGGAAGTGGTCGTGCTCAGGTTGTTGGTGCTGATGGTTGCAGGGTTTTGGAGACAACTGTGAAGGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTTGTCTCAAAGATTGCTGACTCTGATGGATTGGAGTGGTTCTCTATCATCACCACCCCCAATCCTGTGTTTACTCACCTTGCTGGAAGTATTGGGGCGTGGAAGGCTCTTTCACCCACGGTTCTGCAGGCATCTTTCAATGTAGATGCAGGACTTGAGCAACTCTTCCGTTCAAAGAGAAATGCTGATGCCATTTTCTTCCCTCCTCCAAATTAA 1071 0.4641 MEIDLSPQLAKKVYESNGGSYHAWSPSELPMLPEGNIGAAKLALQKNGFALPCYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVITWWYNKEDTELVVLFLGDTSKAHKTGEFTDFYLTGSNGIFTGFSTEFVGRAWDLEEKDVKTLVGKQSGKIIVKLEGNINLPEPKEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGNAMCSPGFSCDSAFQVTYIVRGSGRAQVVGADGCRVLETTVKAGNLFIVPRFFVVSKIADSDGLEWFSIITTPNPVFTHLAGSIGAWKALSPTVLQASFNVDAGLEQLFRSKRNADAIFFPPPN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0551 356 CDD cupin_11S_legumin_N 4 173 - -
Gso12g0551 356 Gene3D Jelly Rolls 197 356 IPR014710 -
Gso12g0551 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Gso12g0551 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Gso12g0551 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Gso12g0551 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Gso12g0551 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Gso12g0551 356 SUPERFAMILY RmlC-like cupins 12 346 IPR011051 -
Gso12g0551 356 CDD cupin_11S_legumin_C 198 353 - -
Gso12g0551 356 Gene3D Jelly Rolls 3 196 IPR014710 -
Gso12g0551 356 PANTHER OS03G0336100 PROTEIN-RELATED 2 346 - -
Gso12g0551 356 PANTHER - 2 346 - -
Gso12g0551 356 SMART Cupin_1_3 195 339 IPR006045 -
Gso12g0551 356 SMART Cupin_1_3 3 157 IPR006045 -
Gso12g0551 356 Pfam Cupin 10 156 IPR006045 -
Gso12g0551 356 Pfam Cupin 199 335 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0551 Gso-Chr12 4935133 4938186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0551 35 333 Miscellaneous Gene Families AT2G18540 21.777 1.64e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0551 - - gmx:100782964 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0551 12 4935133 4938186 Gso11g1217 11 10997978 11000227 GST
Gso15g0368 15 3309092 3311504 Gso12g0551 12 4935133 4938186 PCT
Gso11g3436 11 50324602 50326385 Gso12g0551 12 4935133 4938186 PCT
Gso12g0551 12 4935133 4938186 Gso15g0368 15 3309092 3311504 PCT
Gso12g0551 12 4935133 4938186 Gso11g3436 11 50324602 50326385 PCT