Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1217 ATGGAAATTGATCTTTCTCCCCAATTGGCCAAGAAGGTGTACGAAAGCAATGGTGGGTCTTACCATGCATGGTCCCCTTCTGAGCTCCCCATGTTGCATGAAGGGAACATTGGTGCTGCCAAACTAGCTCTTCAGAAAAATGGTTTTGCCCTTCCTCAATACTCTGACTCTTCCAAGGTTGCATATGTTCTCCAAGGAAGTGGAGTTGCTGGAATTGTGCTCCCTGAATCGGAAGAGAAGGTTCTTGCTATCAAGAAGGGTGATGCTTTGGCACTCCCTTTTGGTGTGATAACCTGGTGGTACAACAAGGAGGACACTGAGTTGGTTGTTCTGTTCTTAGGTGACACTTCAAAAGCCCACAAGACTGGTGAATTCACTGATTTTTACCTAACTGGTTCCAATGGAATCTTCACTGGAGTCTCAACTGAGTTTGTGGGAAGGGCTTGGGACTTAGAAGAGAAGGATGTGAAGACCCTTGTTGGGAAACAATCAGGCAATGGCATTGTAAAGCTTGAAGGGAACATCAACCTTCCTGAGCCCAAAGAGGAACACAGAAAGGGCATGGCATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGAATGGAGGAAGGGTTGTGGTGTTGAACACCAAGAACCTTCCTTTGGTTGGTGAGGTTGGTCTAGGAGCAGACCTTGTGAGGCTTGATGGAAAGGCCATGTGTTCCCCTGGATTCTCTTGTGATTCTGCTTTTCAGGTTACTTATATTGTGAGAGGGAGTGGTCGTGCTCAGGTTGTTGGTGCTGATGGTCGCAGGGTTTTGGAGACAACAGTGAAGGCCGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTTGTCTCAAAGATTGCTGACTCTGATGGATTGGAGTGGTTCTCTATCATCACTACCCCCAATCCTGTATTTACTCACCTGGCTGGAAGTATTGGGACGTGGAAGGCTCTTTCACCCACTGTTCTGCAGGCTGCTTTCAATGTAGATGCAGGACTTGAGCAACTCTTCCGTTCAAAGAGGAATGCTGATGCCATTTTCTTCCCTCCTCCAAATTAA 1071 0.4659 MEIDLSPQLAKKVYESNGGSYHAWSPSELPMLHEGNIGAAKLALQKNGFALPQYSDSSKVAYVLQGSGVAGIVLPESEEKVLAIKKGDALALPFGVITWWYNKEDTELVVLFLGDTSKAHKTGEFTDFYLTGSNGIFTGVSTEFVGRAWDLEEKDVKTLVGKQSGNGIVKLEGNINLPEPKEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGFSCDSAFQVTYIVRGSGRAQVVGADGRRVLETTVKAGNLFIVPRFFVVSKIADSDGLEWFSIITTPNPVFTHLAGSIGTWKALSPTVLQAAFNVDAGLEQLFRSKRNADAIFFPPPN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1217 356 CDD cupin_11S_legumin_N 4 173 - -
Gso11g1217 356 Gene3D Jelly Rolls 197 356 IPR014710 -
Gso11g1217 356 SUPERFAMILY RmlC-like cupins 12 346 IPR011051 -
Gso11g1217 356 SMART Cupin_1_3 195 339 IPR006045 -
Gso11g1217 356 SMART Cupin_1_3 3 157 IPR006045 -
Gso11g1217 356 PANTHER OS03G0336100 PROTEIN-RELATED 2 346 - -
Gso11g1217 356 PANTHER - 2 346 - -
Gso11g1217 356 CDD cupin_11S_legumin_C 198 353 - -
Gso11g1217 356 Pfam Cupin 10 156 IPR006045 -
Gso11g1217 356 Pfam Cupin 199 335 IPR006045 -
Gso11g1217 356 Gene3D Jelly Rolls 3 196 IPR014710 -
Gso11g1217 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Gso11g1217 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Gso11g1217 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Gso11g1217 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Gso11g1217 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1217 Gso-Chr11 10997978 11000227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1217 - - gmx:100779895 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1217 11 10997978 11000227 Gso11g1217 11 10997978 11000227 ECH
Gso12g0551 12 4935133 4938186 Gso11g1217 11 10997978 11000227 GST
Gso15g0368 15 3309092 3311504 Gso11g1217 11 10997978 11000227 PCT
Gso11g3436 11 50324602 50326385 Gso11g1217 11 10997978 11000227 PCT
Gso11g1217 11 10997978 11000227 Gso15g0368 15 3309092 3311504 PCT
Gso11g1217 11 10997978 11000227 Gso11g3436 11 50324602 50326385 PCT