Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0535 ATGGCAGGGAATTCTTCTGATGTACTGTCGCCGAAGCAACCTCCCTTGCCATCTCCCTTGCGTTTCTCCAAATTCTTTCAGTCTAACATGAGAATTTTGATTACGGGAGGAGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTCGAGCTTATTCGTCATGATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGGATTTTACTGACATCAACATCTGAGTTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGCTATTGGGGCAATGTGAACCCTATTGGAGTTCGTAGTTGCTATGATGAGGGGAAACGTGTGGCTGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGTGTTGCAAGAATCTTTAACACATATGGGCCGCGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGTGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGGTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGACCAATCAACCTTGGAAATCCAGGTGAATTTACAATGCTAGAACTTGCTGAGACAGTGAAGGAGCTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATCCGCGACAGAGAAAACCAATCATAACAAAAGCAATGGAATTGCTTGGCTGGGAACCAAAGGTTAAGCTGCGAGATGGCCTTCCTCTTATGGAAGAGGATTTTCGTTTGAGGCTTGGATTTGACAAAAAAAATTAA 1032 0.4302 MAGNSSDVLSPKQPPLPSPLRFSKFFQSNMRILITGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLTIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSELYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRVARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTMLELAETVKELINPDVEIKVVENTPDDPRQRKPIITKAMELLGWEPKVKLRDGLPLMEEDFRLRLGFDKKN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0535 343 Gene3D - 29 336 - -
Gso12g0535 343 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 3 343 - -
Gso12g0535 343 CDD UGD_SDR_e 30 334 - -
Gso12g0535 343 Pfam GDP-mannose 4,6 dehydratase 33 327 IPR016040 -
Gso12g0535 343 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 3 343 IPR044516 GO:0042732|GO:0048040|GO:0070403
Gso12g0535 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 334 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0535 Gso-Chr12 4799620 4804295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0535 27 342 Miscellaneous Gene Families AT1G02000 22.792 3.44e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0535 K08678 - gmx:100818771 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0535 12 4799620 4804295 Gso11g1197 11 10801798 10806690 GST
Gso15g0351 15 3172880 3177880 Gso12g0535 12 4799620 4804295 PCT
Gso11g3457 11 50476771 50481305 Gso12g0535 12 4799620 4804295 PCT