Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1197 ATGGCAACGAATTCTTCTAATGGAGCAACAAAGCAACCTCCCATGCCATCTCCCTTGCGTTTTTCCAAGTTCTTTCAGTCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGACAACTACTTCACTGGATCTAAAGACAACCTTAAAAGATGGATTGGCCATCCAAGATTTGAGCTAATTCGTCATGATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGGCTTGCTAAGCGTGTGGGAGCAAGGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTAAACCCCATTGGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATCGAAATACGCATTGCGAGAATCTTCAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATTGCTCAAGCAATTCGTGGTGAACCCTTGACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGGTGAATTTACAATGATTGAACTTGCCGAGAATGTGAAAGAGCTTATCAATCCAAAAGTGCAGATAAATATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATTACAAAAGCAAAGGAATTGCTGAGATGGGAACCAAAGGTCAAGTTGTATGATGGCCTTCCTCTCATGGAAGAGGATTTCCGTCAGAGGCTTGGAGTTCCCAAGAGCAACTAA 1029 0.4237 MATNSSNGATKQPPMPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKRWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPKVQINMVENTPDDPRQRKPDITKAKELLRWEPKVKLYDGLPLMEEDFRQRLGVPKSN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1197 342 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 3-RELATED 1 341 - -
Gso11g1197 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 336 IPR036291 -
Gso11g1197 342 CDD UGD_SDR_e 29 333 - -
Gso11g1197 342 Gene3D - 28 337 - -
Gso11g1197 342 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 341 IPR044516 GO:0042732|GO:0048040|GO:0070403
Gso11g1197 342 Pfam GDP-mannose 4,6 dehydratase 32 325 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1197 Gso-Chr11 10801798 10806690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1197 26 325 Miscellaneous Gene Families AT1G02000 23.494 1.18e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1197 K08678 - gmx:114819094 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0535 12 4799620 4804295 Gso11g1197 11 10801798 10806690 GST
Gso15g0351 15 3172880 3177880 Gso11g1197 11 10801798 10806690 PCT
Gso11g3457 11 50476771 50481305 Gso11g1197 11 10801798 10806690 PCT