LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g0409	ATGATGATGATGGGGAACAATGTGCATAGCATTGGTGTCATAGGAGTGATGGTGAGTGGCTTAGTGTTGATGATGGTGTCAAAAGGTGTGAGTGTGAGAGCTCAAAACTGTGGGTGTGAGGCAGAGTTATGTTGCAGCAAATACGGGTATTGTGGGAGTGGTGATGACTACTGTGGCAAAGGATGCAAAGAGGGTCCTTGCTATGGCACTGCCACACCCAACGACGATGTTTCCGTGGCCGACATCGTCACTTCCGAGTTCTTCAACGCCATAATCGATCAAGCAGAAGACCATTGTGCTGGCAAGAATTTCTACTCACGAGATGCCTTCCTTGATGCTCTCATTGCCTACGACCAGTTTGCTAAGACTGGTTCTGTTGATGACTCCAAGCGTGAAATTGCAGCTGCTTTTGCTCATTTCACCTACCAATCTCGACATTTTTGCTACATAGAAGAGATTGAAGGTGCATCAAAGGACTACTGTGACAAAACCAACCGCCATTACCCGTGTGCCCATAACAAAGGTTACTATGGACGTGGACCCATCCAACTATCATGGAACTTCAACTACGGGCCAGCAGGGGAGAACAATGGTTTTGATGGATTGAACGCTCCAGAGACAGTGGCCAGTGACCCTGTTATATCCTTCAAGACGGCGTTGTGGTACTGGACACAGAATGTGAGCCCTGTGATGAAGCATGGTTTTGGTGCAACCATTAGAGCTATCAATGGTCATCTTGAATGTGATGGAGCAAACCCTGAAACTGTTCAGGCTAGGGTCAATTACTATACTGAATATTGTTCACAGCTTGATGTTGCTCCGGGAGATAACCTCACTTGCTAA	843	0.4686	MMMMGNNVHSIGVIGVMVSGLVLMMVSKGVSVRAQNCGCEAELCCSKYGYCGSGDDYCGKGCKEGPCYGTATPNDDVSVADIVTSEFFNAIIDQAEDHCAGKNFYSRDAFLDALIAYDQFAKTGSVDDSKREIAAAFAHFTYQSRHFCYIEEIEGASKDYCDKTNRHYPCAHNKGYYGRGPIQLSWNFNYGPAGENNGFDGLNAPETVASDPVISFKTALWYWTQNVSPVMKHGFGATIRAINGHLECDGANPETVQARVNYYTEYCSQLDVAPGDNLTC*	281

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso12g0409	280	ProSiteProfiles	Chitin-binding type-1 domain profile.	34	69	IPR001002	GO:0008061
	Gso12g0409	280	Gene3D	-	79	280	-	-
	Gso12g0409	280	ProSitePatterns	Chitin recognition or binding domain signature.	39	58	IPR018371	GO:0008061
	Gso12g0409	280	Pfam	Chitinase class I	232	280	IPR000726	GO:0004568\|GO:0006032\|GO:0016998
	Gso12g0409	280	Pfam	Chitinase class I	82	228	IPR000726	GO:0004568\|GO:0006032\|GO:0016998
	Gso12g0409	280	Gene3D	Endochitinase, domain 2	151	208	-	-
	Gso12g0409	280	PANTHER	ENDOCHITINASE EP3	21	280	-	-
	Gso12g0409	280	ProSitePatterns	Chitinases family 19 signature 1.	99	121	IPR000726	GO:0004568\|GO:0006032\|GO:0016998
	Gso12g0409	280	SMART	ChitinBD_3	36	67	IPR001002	GO:0008061
	Gso12g0409	280	PIRSF	Endochitinase	3	280	IPR016283	GO:0004568\|GO:0005975
	Gso12g0409	280	PANTHER	CHITINASE-RELATED	21	280	-	-
	Gso12g0409	280	SUPERFAMILY	Lysozyme-like	78	280	IPR023346	-
	Gso12g0409	280	CDD	chitinase_GH19	83	280	-	-
	Gso12g0409	280	SUPERFAMILY	Plant lectins/antimicrobial peptides	33	72	IPR036861	GO:0008061
	Gso12g0409	280	Gene3D	-	30	78	IPR036861	GO:0008061
	Gso12g0409	280	Pfam	Chitin recognition protein	35	67	IPR001002	GO:0008061
	Gso12g0409	280	CDD	ChtBD1	39	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g0409	Gso-Chr12	3574326	3576349	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g0409	2	280	Glycoside Hydrolase	AT3G54420	65.233	3.78e-135	381

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g0409	K01183		-	gmx:100778526	571.237

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso12g0409	12	3574326	3576349	Gso11g1062	11	9485112	9486775	GST
	Gso11g3561	11	51368967	51370144	Gso12g0409	12	3574326	3576349	PCT
	Gso12g0409	12	3574326	3576349	Gso11g3561	11	51368967	51370144	PCT