Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3561 ATGATAGGAAAGAAATTCTTATGCGTTGTTGTAGCGGTGGCCTTTGTTATGATAACAAAGGTGCCCCAAAATGTGAGTGCTCAAAACTGTGGTTGTGCTGAAGGGTTATGTTGCAGCCAACATGGGTATTGTGGTAACGGTGAGGAGTACTGCGGCACAGGGTGCAAGCAGGGTCCTTGTTATTCGAGCACACCAAGTACTAACAATGTTAATGTGGCTGACATTGTCACACCACAATTCTTCAGTGGCATAATTGATCAGGCTGACTCTGGCTGTGCTGGCAAGAACTTTTACTCACGAGATGCTTTTCTTAATGCTCTCAATTCCTATAATGACTTTGGTAGACTTGGTTCCGAGGATGACTCCAAGCGCGAGATTGCAGCTGCTTTTGCCCATTTCACACATGAAACTGGACATTTTTGCCACATTGAAGAGATTAATGGTGCATCGCAGGACTACTGCGACGAGAATACGATTTCACAGTATCCGTGCCTTTCTAACAGAGGTTACTATGGGCGTGGTCCGATCCAACTAACATGGAACTTCAACTATGGACCTGCTGGACAGAGCAACGATTTTGATGGATTGAACGCTCCTGAAACAGTGGGCAATGATCCTGTGATTTCTTTCAAGACAGCACTGTGGTACTGGATGCAACACGTGCGCCCTGTCATCAACCAAGGCTTTGGTGCAACCATCAGAGCCATTAACGGTCAACTTGAATGTGATGGTGCCAACCCTTCCACAGTTCAGGCTCGCGTTAATTACTACACTGACTACTGTAGACAATTCGGTGTTGCCACCGGTGATAATCTTACTTGCTAA 825 0.4594 MIGKKFLCVVVAVAFVMITKVPQNVSAQNCGCAEGLCCSQHGYCGNGEEYCGTGCKQGPCYSSTPSTNNVNVADIVTPQFFSGIIDQADSGCAGKNFYSRDAFLNALNSYNDFGRLGSEDDSKREIAAAFAHFTHETGHFCHIEEINGASQDYCDENTISQYPCLSNRGYYGRGPIQLTWNFNYGPAGQSNDFDGLNAPETVGNDPVISFKTALWYWMQHVRPVINQGFGATIRAINGQLECDGANPSTVQARVNYYTDYCRQFGVATGDNLTC* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3561 274 Gene3D - 24 72 IPR036861 GO:0008061
Gso11g3561 274 SMART ChitinBD_3 29 60 IPR001002 GO:0008061
Gso11g3561 274 Gene3D - 73 274 - -
Gso11g3561 274 CDD ChtBD1 32 60 - -
Gso11g3561 274 SUPERFAMILY Plant lectins/antimicrobial peptides 25 67 IPR036861 GO:0008061
Gso11g3561 274 ProSitePatterns Chitinases family 19 signature 1. 92 114 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gso11g3561 274 ProSitePatterns Chitinases family 19 signature 2. 208 218 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gso11g3561 274 Pfam Chitin recognition protein 27 60 IPR001002 GO:0008061
Gso11g3561 274 ProSiteProfiles Chitin-binding type-1 domain profile. 27 62 IPR001002 GO:0008061
Gso11g3561 274 CDD chitinase_GH19 76 274 - -
Gso11g3561 274 PANTHER CHITINASE-RELATED 11 274 - -
Gso11g3561 274 PANTHER ENDOCHITINASE EP3 11 274 - -
Gso11g3561 274 SUPERFAMILY Lysozyme-like 71 274 IPR023346 -
Gso11g3561 274 PIRSF Endochitinase 1 274 IPR016283 GO:0004568|GO:0005975
Gso11g3561 274 Pfam Chitinase class I 76 220 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gso11g3561 274 Pfam Chitinase class I 227 274 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gso11g3561 274 ProSitePatterns Chitin recognition or binding domain signature. 32 51 IPR018371 GO:0008061
Gso11g3561 274 Gene3D Endochitinase, domain 2 144 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3561 Gso-Chr11 51368967 51370144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3561 12 274 Glycoside Hydrolase AT3G54420 70.037 4.33e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3561 K01183 - gmx:100776582 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3561 11 51368967 51370144 Gso12g0409 12 3574326 3576349 PCT
Gso11g3561 11 51368967 51370144 Gso11g1062 11 9485112 9486775 PCT
Gso12g0409 12 3574326 3576349 Gso11g3561 11 51368967 51370144 PCT
Gso11g1062 11 9485112 9486775 Gso11g3561 11 51368967 51370144 PCT