Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1062 ATGAGCAAGTTACTACTCATTCGTGTTGCTGGGTTCGTGGCAACCTTTGTCACCATGGTGATGATGATGGTGCCCAAAAACGTGAGTGCCCAAAACATAGGTGATGACATCGTCACACAAGACTTCTTCAACAGCATAATCAGTCAGGCTGATGATGGTTGTGCAGGGAAGAACTTCTACTCACGAGATGCTTTCCTTAATGCTCACAATTCCTACAATGAGTTTGGTAGGCTTGGTAATCAGGATGACTCCAAGCGTGAGGTTGCAGCTGCTTTCGCCCATTTCACCCATGAAACAGGACATTTTTGCTACATAGAAGAGATTAACGGTGCATCAGGGGACTACTGTGACGAGAGCAACACCGAGTACCCATGTGCCCCTAACAAAGCGTACTATGGGCGTGGACCAATCCAACTATCATGGAACTTCAACTACGGACCAGCAGGGCAGAGCATCGGATTTGATGGATTGAACGCTCCAGAGACGGTGGCCAATGACCCTGTTGTGTCCTTCAAGACAGCCTTGTGGTACTGGATGGAACATGTGCGTCCTGTCATCAACCAGGGTTTTGGTGCAACCATTAGAGCTATCAATGGCCGACTTGAATGTGATGGTGCAAACCCTAGTACTGTTCAGGCTCGTGTTAATTACTACACCCAGTATTGTTCACAACTTGGTGTTTCCCCTGGTGACAATCTTACTTGCTAA 708 0.4746 MSKLLLIRVAGFVATFVTMVMMMVPKNVSAQNIGDDIVTQDFFNSIISQADDGCAGKNFYSRDAFLNAHNSYNEFGRLGNQDDSKREVAAAFAHFTHETGHFCYIEEINGASGDYCDESNTEYPCAPNKAYYGRGPIQLSWNFNYGPAGQSIGFDGLNAPETVANDPVVSFKTALWYWMEHVRPVINQGFGATIRAINGRLECDGANPSTVQARVNYYTQYCSQLGVSPGDNLTC* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1062 235 CDD chitinase_GH19 38 235 - -
Gso11g1062 235 PIRSF Endochitinase 5 235 IPR016283 GO:0004568|GO:0005975
Gso11g1062 235 PANTHER CHITINASE-RELATED 16 235 - -
Gso11g1062 235 SUPERFAMILY Lysozyme-like 36 235 IPR023346 -
Gso11g1062 235 Pfam Chitinase class I 37 181 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gso11g1062 235 Pfam Chitinase class I 188 235 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gso11g1062 235 PANTHER ENDOCHITINASE EP3-LIKE 16 235 - -
Gso11g1062 235 Gene3D Endochitinase, domain 2 106 163 - -
Gso11g1062 235 ProSitePatterns Chitinases family 19 signature 2. 169 179 IPR000726 GO:0004568|GO:0006032|GO:0016998
Gso11g1062 235 Gene3D - 33 235 - -
Gso11g1062 235 ProSitePatterns Chitinases family 19 signature 1. 54 76 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1062 Gso-Chr11 9485112 9486775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1062 36 235 Glycoside Hydrolase AT3G54420 77.500 5.18e-118 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1062 K01183 - gmx:100527091 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1062 11 9485112 9486775 Gso11g1062 11 9485112 9486775 ECH
Gso12g0409 12 3574326 3576349 Gso11g1062 11 9485112 9486775 GST
Gso11g3561 11 51368967 51370144 Gso11g1062 11 9485112 9486775 PCT
Gso11g1062 11 9485112 9486775 Gso11g3561 11 51368967 51370144 PCT