Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3700 ATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAAGCCCTACACACAACACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCAGACTCTCCTCGCCCGCCACTTCACCGCCCAATCAGGTTTTCCTTCTCTCCATTTCCCCTATATATTGAATTGCTCGTTTCTTAATTCAATTTCGTTCTTGTTATCTCAATCAGGTGCTTCTTCCCTCAAAAAGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCCGATCTCGAGGGAAGGGATATTCTTGAAATAAACCATCCCGTAGGTCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGTGAAGGTGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTATAGAATGCCCAGTGTGCTCACAGTATTTTAAGTTGGAAGTGGTCGGCCCTGGTGGCGATCCTTATGGACATGGCGATCACGATCACCACTGA 540 0.4889 MWRRLFSSSNLKALHTTLSPSRPRLAAQTLLARHFTAQSGFPSLHFPYILNCSFLNSISFLLSQSGASSLKKRVEDVVPIATGHEREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEGEGEHDVVWFWLEKGKPIECPVCSQYFKLEVVGPGGDPYGHGDHDHH* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3700 179 Pfam Cytochrome c oxidase subunit Vb 81 169 IPR002124 GO:0005740|GO:0005751|GO:0006123
Gso11g3700 179 CDD Cyt_c_Oxidase_Vb 69 166 IPR002124 GO:0005740|GO:0005751|GO:0006123
Gso11g3700 179 Gene3D Cytochrome c oxidase, subunit Vb 71 164 IPR036972 GO:0005740|GO:0005751|GO:0006123
Gso11g3700 179 ProSiteProfiles Cytochrome c oxidase subunit Vb, zinc binding domain profile. 69 168 IPR002124 GO:0005740|GO:0005751|GO:0006123
Gso11g3700 179 SUPERFAMILY Rubredoxin-like 70 167 - -
Gso11g3700 179 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 56 179 IPR002124 GO:0005740|GO:0005751|GO:0006123
Gso11g3700 179 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 1 44 IPR002124 GO:0005740|GO:0005751|GO:0006123
Gso11g3700 179 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B 1 44 - -
Gso11g3700 179 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B 56 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3700 Gso-Chr11 52662667 52665023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3700 K02265 - gmx:100527520 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0103 15 823980 827124 Gso11g3700 11 52662667 52665023 GST
Gso11g3700 11 52662667 52665023 Gso8g1744 8 17051746 17055725 PCT
Gso8g1744 8 17051746 17055725 Gso11g3700 11 52662667 52665023 PCT