Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3514 ATGGGTGCCGTTAGGTCCATAACGGTGTTGCTACTAGTGTTATTTATGGCCATGAGCTCCGGCGTGCGCTCGTGTCCGCCGTCGGACAGGGCGGCGCTGCTGGCATTCAAGGCGGCGCTCCACGAACCCTACCTGGGAATCTTCAACTCGTGGACCGGCGCCGACTGCTGCCACAAGTGGTACGGCGTGAGCTGCGACCAGGAGACCCGCCGCGTCGCCGACATCAACCTCCGCGGCGAGTCGGAGGAGCCGATCTTCGAGCGCGCCCACCGCACCGGCTACATGACCGGCTACATCTCGCCGGCGATCTGCAAGCTCGCGCGCCTCTCCAGCATCACCATCGCCGACTGGAAGGGAATCTCCGGCGAGATCCCGCGCTGCATCACGACCCTCCCGTTCCTCCGCATCGTCGACCTCATCGGAAACCGCCTCTCCGGCTCCATTCCCGCCGACATCGGCAGACTCCATCGGCTCACGGTGCTCAACGTCGCCGACAATCTCATCTCCGGAACAATCCCAACCTCGCTGGCGAACCTCAGCAGTCTCATGCACTTGGATCTCCGAAACAACCTCTTCTCCGGGCCCATTCCAAGAAACTTCGGTTCTCTCAGCATGCTGAGCCGGGCCTTGCTCAGCGGAAACAGGCTAAGTGGGGCCATCCCGAGCTCGGTTTCTCAGATTTACCGTCTGGCGGATCTGGATCTGTCTCGTAACCAGATTTCTGGGCCCATTCCGGAGTCGCTGGGTAAAATGGCGGTTTTATCGACACTAAACTTGGATATGAATAAACTCTCTGGGCCCATTCCGGTGAGTCTGTTTAGTTCCGGAATCAGTGACTTAAACCTGAGCCGGAACGCCTTGGAGGGAAACATACCGGACGCGTTCGGCGTGAGGTCTTATTTCACTGCTCTGGATTTGTCGTATAATAACCTAAAAGGGGCCATACCTAAGTCCATATCCTCTGCTTCCTATATTGGGCACTTGGATTTGAGTCATAACCATCTCTGTGGCAAGATTCCCCTTGGCTCTCCTTTTGATCATCTCGAAGCCTCCTCCTTTGTCTACAACGATTGTCTCTGCGGGAAGCCCCTCAAACCTTGCTACTAG 1107 0.5727 MGAVRSITVLLLVLFMAMSSGVRSCPPSDRAALLAFKAALHEPYLGIFNSWTGADCCHKWYGVSCDQETRRVADINLRGESEEPIFERAHRTGYMTGYISPAICKLARLSSITIADWKGISGEIPRCITTLPFLRIVDLIGNRLSGSIPADIGRLHRLTVLNVADNLISGTIPTSLANLSSLMHLDLRNNLFSGPIPRNFGSLSMLSRALLSGNRLSGAIPSSVSQIYRLADLDLSRNQISGPIPESLGKMAVLSTLNLDMNKLSGPIPVSLFSSGISDLNLSRNALEGNIPDAFGVRSYFTALDLSYNNLKGAIPKSISSASYIGHLDLSHNHLCGKIPLGSPFDHLEASSFVYNDCLCGKPLKPCY* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3514 368 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 5 367 - -
Gso11g3514 368 SUPERFAMILY L domain-like 24 367 - -
Gso11g3514 368 Gene3D Ribonuclease Inhibitor 198 274 IPR032675 -
Gso11g3514 368 Pfam Leucine rich repeat 278 335 IPR001611 GO:0005515
Gso11g3514 368 Pfam Leucine rich repeat 157 216 IPR001611 GO:0005515
Gso11g3514 368 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Gso11g3514 368 Gene3D Ribonuclease Inhibitor 27 197 IPR032675 -
Gso11g3514 368 Gene3D Ribonuclease Inhibitor 277 367 IPR032675 -
Gso11g3514 368 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 5 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3514 Gso-Chr11 50989322 50991237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3514 68 367 Receptor kinase-like Gene Family AT5G46330 36.202 2.63e-48 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3514 - - gmx:100804739 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3514 11 50989322 50991237 Gso12g0462 12 4083195 4084609 PCT
Gso11g3514 11 50989322 50991237 Gso11g1118 11 10052153 10053586 PCT
Gso12g0462 12 4083195 4084609 Gso11g3514 11 50989322 50991237 PCT
Gso11g1118 11 10052153 10053586 Gso11g3514 11 50989322 50991237 PCT