Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3459 ATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCCAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGGATTTGAAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACTTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGTATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAG 1359 0.4224 MGDTVDYSYLSSIPKPGSVVAKNKAYKNLLIASLPKSFVQRNHGHVISLIRGRFGSRDMSGITFFLLKVAALEIIRRFSKRRCPCVWRGLQALQILCYPPFKWIQRWAPFKSLVDGMQVLSRPLLALSIATLFPDLSKCSDGKSDCSTDSQDAVAYSELSPLQVDLNTRINDDELRRFYAASNNDFSCFLTSIKKTIRWRETYRILSEEELKMSSKMVFWHGSDVGQRPCLIIRFGLACSTLTSEDRPRFAQAVISQVEYGVLHLVDADNPQITVLVDCEGLSPVRIPMQIIRSCSSLLKDHFPNRLGCMFVIRLPANVHVIAQTFIQDLKPATRNKLKIEGEMHQKVLSDYMPTLPSYLGGCCTCMKCSNIGQGDMLQTYATGTSRRDGLEDTSDSDNDNEDSPTLHPCDELEGNLYGNYDQLLRTAIVGILIFWVFIALGAVVFDPSNRH* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3459 452 Pfam CRAL/TRIO domain 215 362 IPR001251 -
Gso11g3459 452 Gene3D - 148 394 IPR036865 -
Gso11g3459 452 MobiDBLite consensus disorder prediction 386 409 - -
Gso11g3459 452 SUPERFAMILY CRAL/TRIO domain 215 367 IPR036865 -
Gso11g3459 452 CDD SEC14 208 362 IPR001251 -
Gso11g3459 452 PANTHER SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN 157 450 - -
Gso11g3459 452 PANTHER SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN 17 160 - -
Gso11g3459 452 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 208 368 IPR001251 -
Gso11g3459 452 SMART sec14_4 212 365 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3459 Gso-Chr11 50496037 50500737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3459 - - gmx:100786191 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0350 15 3159293 3166495 Gso11g3459 11 50496037 50500737 GST
Gso11g3459 11 50496037 50500737 Gso11g1196 11 10793858 10799239 PCT
Gso11g1196 11 10793858 10799239 Gso11g3459 11 50496037 50500737 PCT