Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1196 ATGCCTTCAGTTTACATGGGAGATAGGATGGATAATTCTAACTCGAGCTTGAGTTCTAATTCTAAAGAAAGCAGTGTTGTTGTTAATGGGAAAGAAACGTACAAAAAACTTCTGGTTGCATCACGGCCTAAAGGCTTTGCACAGAGAAATTATGAACACCTTGTGTCATTAACCCATGGTGACTTTGGAAGCAGTGCTGTGGGACGTGTCACGTTTTTTCTACTAAAACTTGCTGCATTAGAAACCGTGAGGAGATTCTCCAGGAGTAAATGTCCGTGTGTATGGCGAGGCCTACAGGGTCTCCAAATCCTTGTCTATCCACCATTCAAATGGATTCAGAGGTGGGCACCCTTCAGGGGTTTGGTGAAAAGCATGCAGGTACTATCAAGACCTCTATTAGTCCTTTCTATTGCAACCGTCTTTACTGATCAACCACAATGTAGTGATGGAACCTCAGATTGTGTTGCTTCGCATGATTCTGAAGCATCCGCCGAACTATCTCCAGCAGAGGCTAATTTGAATACAAGTCATTGTGAGATAGATCCTGAAGTTTTAGAATATGAAAACTGGTTGACTCTACTCAATCAAGAGCTGGAAAATCAAGGGATTAGTTTGCCAGAAAGAATCAATGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTCTTCATGCTTCCTTACCTCAATCAAGAAGACAATAAGTTGGCGGGACAGTTACAGATTTCTTTCAGGGGAAGAGCTGGAAACGTGGTCAAATATGGTTTTTTGGCATGGATCTGATTTTTCGCACAGACCTTGCCTCATTGTAAGGCTTGGGATAGCCTGTCGCTCTTTGGCATCTGAAGATAGACTTCAATTTGCTCAGGCAGTTATATCACAGGTAGAATACGGAGTCTTGCACTTGGTTGATGCAAGCAACCCTCAAATTACAGTATTGGTGGATTGTGAAGGGTTATCTCCATTGAGAATTCCTATGAAAATGTTGAGATCTTGTTCCTCCCTTCTGCTAGAACACTTTCCTAATCGTCTTGGTTGTTTGTTTATCATCCGACTTCCAGCAATTGTTCGTGTTATTGCCCAGACTTTTATTCAGGTTTTAAAGCCATCTACTAGGAAGAAGTTGAAGTTAGGAGGAGAGGTATATCGGAAGGTACTTTATGACAATTTTCCGACCCTACCATCATATCTTGGAGGCAGCTGCTCTTGCATGAGATGTTCTAAAATTGGCAACTGGGATATTCTGCAACCTCATGCAACTGGGACCAGCCGGATTGATAGAGAGGAGGATATCAGTGACAATAGGGGTTTGCCATCACTGCATCAATCTAATGAATTAGATGGCCACCAAACCAGCAATTCTGACCAGCTGTTGAGAAAGGCTGTCATAAGTATTCTCGTATTTTGGGTTTTCATAGCTCTTGGTGCTGGAATTTACGATCCTAGTAGTCTTCATTTACCCCCATAA 1473 0.4209 MPSVYMGDRMDNSNSSLSSNSKESSVVVNGKETYKKLLVASRPKGFAQRNYEHLVSLTHGDFGSSAVGRVTFFLLKLAALETVRRFSRSKCPCVWRGLQGLQILVYPPFKWIQRWAPFRGLVKSMQVLSRPLLVLSIATVFTDQPQCSDGTSDCVASHDSEASAELSPAEANLNTSHCEIDPEVLEYENWLTLLNQELENQGISLPERINDDELHRFYTASNNDSSCFLTSIKKTISWRDSYRFLSGEELETWSNMVFWHGSDFSHRPCLIVRLGIACRSLASEDRLQFAQAVISQVEYGVLHLVDASNPQITVLVDCEGLSPLRIPMKMLRSCSSLLLEHFPNRLGCLFIIRLPAIVRVIAQTFIQVLKPSTRKKLKLGGEVYRKVLYDNFPTLPSYLGGSCSCMRCSKIGNWDILQPHATGTSRIDREEDISDNRGLPSLHQSNELDGHQTSNSDQLLRKAVISILVFWVFIALGAGIYDPSSLHLPP* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1196 490 MobiDBLite consensus disorder prediction 1 24 - -
Gso11g1196 490 PANTHER SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN 15 486 - -
Gso11g1196 490 SMART sec14_4 251 404 IPR001251 -
Gso11g1196 490 MobiDBLite consensus disorder prediction 8 24 - -
Gso11g1196 490 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 259 407 IPR001251 -
Gso11g1196 490 Pfam CRAL/TRIO domain 255 401 IPR001251 -
Gso11g1196 490 SUPERFAMILY CRAL/TRIO domain 254 406 IPR036865 -
Gso11g1196 490 CDD SEC14 248 401 IPR001251 -
Gso11g1196 490 Gene3D - 186 433 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1196 Gso-Chr11 10793858 10799239 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1196 - - gmx:100814843 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1196 11 10793858 10799239 Gso11g1196 11 10793858 10799239 ECH
Gso15g0350 15 3159293 3166495 Gso11g1196 11 10793858 10799239 PCT
Gso11g3459 11 50496037 50500737 Gso11g1196 11 10793858 10799239 PCT
Gso11g1196 11 10793858 10799239 Gso15g0350 15 3159293 3166495 PCT
Gso11g1196 11 10793858 10799239 Gso11g3459 11 50496037 50500737 PCT