Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3403 ATGAGAGGTAGCAACCACTTGATCGGTTTGTTAAACTTCTTGACTTTTTTGCTGTCAGTTCCAATCCTTGTGTGTGGGATATGGCTGAGCACCAGAGCTAACAACACAGAATGCCTCAAGTTCCTTCAGTGGCCGTTAATCGTCATAGGAATCAGCGTCATGGTTACATCCTTAGCCGGTTTGGTCGGAGCCTGTTACCGGAACAGCTTCCTCATGAGCCTCTACCTCGTTGTCATGCTCTTCATACTCTTGGTCCTCGTTGGCTTCATCGTCTTTGCATATGCTGTCACAGCCAAGGGTTCCGGGAGGGAGACACTGAACCGCGCTTACTTGGAGTATTACCTGCAGGACTACGATGGTTGGTTGAAGAAACGCGTGGAAAGTGATGGCTATTGGAGAAAGATAAGGTCTTGTGTTAGGGACTCTAGGGTTTGTGGGAAGATTGGGAGAACCGTTGATGGGGTGCCTGAAACTGCTGATATGTTCTACCTCAGGAAGCTCTCTCCTATTCAGTCTGGATGCTGCAAGCCCCAGAGAGAGTGTGGGTATGTGTATGAGAACGAGACGGTGTGGAGGCCAAGAGAAGGAGTGGTGGTGGGAAGCAACCCAGACTGCACTAGGTGGAGCAATGACCAACACTTGCTTTGCTATGACTGTGACTCATGCAAGGCTGGTGTATTGGCTACTCTAAAGAAAAGTTGGAGGAAGGTTTCCGTCATTAATATTCCTGTCTTGGTAACCCTTGTGGTTCTTTACATCATTGCTTATGCTGCGTATAAGAACAACCGCAGGATAAATAACTGCGAACCATGTGGTCAAACAAGGATGACAACATTACAACCTAAGTAG 849 0.477 MRGSNHLIGLLNFLTFLLSVPILVCGIWLSTRANNTECLKFLQWPLIVIGISVMVTSLAGLVGACYRNSFLMSLYLVVMLFILLVLVGFIVFAYAVTAKGSGRETLNRAYLEYYLQDYDGWLKKRVESDGYWRKIRSCVRDSRVCGKIGRTVDGVPETADMFYLRKLSPIQSGCCKPQRECGYVYENETVWRPREGVVVGSNPDCTRWSNDQHLLCYDCDSCKAGVLATLKKSWRKVSVINIPVLVTLVVLYIIAYAAYKNNRRINNCEPCGQTRMTTLQPK* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3403 282 PRINTS Transmembrane four family signature 6 29 - -
Gso11g3403 282 PRINTS Transmembrane four family signature 39 65 - -
Gso11g3403 282 PRINTS Transmembrane four family signature 66 94 - -
Gso11g3403 282 ProSitePatterns Transmembrane 4 family signature. 50 72 IPR018503 GO:0016021
Gso11g3403 282 PANTHER TETRASPANIN-8-RELATED 1 279 IPR044991 GO:0009734|GO:0016021
Gso11g3403 282 Pfam Tetraspanin family 6 254 IPR018499 GO:0016021
Gso11g3403 282 PANTHER TETRASPANIN-3-LIKE 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3403 Gso-Chr11 49932325 49935675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3403 1 279 Miscellaneous Gene Families AT5G60220 66.667 8.18e-122 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3403 - - gmx:100820399 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3403 11 49932325 49935675 Gso12g0591 12 5338305 5342807 PCT
Gso11g3403 11 49932325 49935675 Gso11g1250 11 11525353 11530939 PCT
Gso12g0591 12 5338305 5342807 Gso11g3403 11 49932325 49935675 PCT
Gso11g1250 11 11525353 11530939 Gso11g3403 11 49932325 49935675 PCT