Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1250 ATGAGAAAAAGCAACCACTTGATCGGTCTCTTAAACTTCCTAACATTCCTGCTGTCGATTCCGATCCTAGGAGGCGGGATATGGCTGAGCAGCAGGGCGAACAACACCGACTGCCTCAAGTTCCTGCAGTGGCCGCTCATCATCATCGGCGTCAGCATCATGGTCGTGTCCCTGGCGGGGTTCGCCGGCGCGTGTTACCGCAACACCTTCCTCATGCGGCTCTACCTCGTCGTCATGTTCCTGGTCATTGCCGTTCTGATCGGGTTCATCATATTCGCCTACGTTGTCACCGACAAGGGGTCCGGTCGGAGGGTGATGAGCCGCGCTTACTTGGAGTATTATCTTGAGGACTATTCGGGGTGGTTGGAGGAGCGCGTGGCGAGTGATAGCTACTGGGGGAAGATTGCTTCGTGTGTTAGGGATTCTAAAGCGTGTGGGAGGATGGGGATAACCATTAATGGGATGCCCGAGACTCCTGATATGTTCTACATCAGACATCTCACCCCTATTCAGTCTGGTTGCTGCAAGCCCCCAACAGATTGTGGCTATGTCTATCAGAATGAGACAGTGTGGATCCCAGGATCAGGATTGATGGGAGCCAACCCAGATTGCACAAGGTGGAGCAATGATCAAGAGCAGCTTTGCTATGCATGTGATTCTTGCAAGGCTGGTGTGCTGGCAAGTCTCAAGAAGAGTTGGAGGAAGGTCTCAGTGATCAACATTGTTGTTATGATCATCCTTGTCATTGTTTACATAATTGCTTATGCAGCTTATAGGAACAACCGCAAGATGGATAACGATGAGCCCTATGGTGAAGCAAGGATGACAAAGGCTCAACCTAGTGCCTTCCATCTTTAG 858 0.5093 MRKSNHLIGLLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGVSIMVVSLAGFAGACYRNTFLMRLYLVVMFLVIAVLIGFIIFAYVVTDKGSGRRVMSRAYLEYYLEDYSGWLEERVASDSYWGKIASCVRDSKACGRMGITINGMPETPDMFYIRHLTPIQSGCCKPPTDCGYVYQNETVWIPGSGLMGANPDCTRWSNDQEQLCYACDSCKAGVLASLKKSWRKVSVINIVVMIILVIVYIIAYAAYRNNRKMDNDEPYGEARMTKAQPSAFHL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1250 285 PANTHER TETRASPANIN-3-LIKE 1 279 - -
Gso11g1250 285 Pfam Tetraspanin family 6 253 IPR018499 GO:0016021
Gso11g1250 285 PANTHER TETRASPANIN-8-RELATED 1 279 IPR044991 GO:0009734|GO:0016021
Gso11g1250 285 PRINTS Transmembrane four family signature 6 29 - -
Gso11g1250 285 PRINTS Transmembrane four family signature 39 65 - -
Gso11g1250 285 PRINTS Transmembrane four family signature 66 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1250 Gso-Chr11 11525353 11530939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1250 1 277 Miscellaneous Gene Families AT5G60220 72.924 1.37e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1250 - - gmx:100788977 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1250 11 11525353 11530939 Gso11g1250 11 11525353 11530939 ECH
Gso12g0591 12 5338305 5342807 Gso11g1250 11 11525353 11530939 GST
Gso11g3403 11 49932325 49935675 Gso11g1250 11 11525353 11530939 PCT
Gso11g1250 11 11525353 11530939 Gso11g3403 11 49932325 49935675 PCT