LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g1466	ATGGCATTGGCATCATCACCATCCCTCTCCAAAGTTTATCTGTTTCTTGTGTTGCTTTTGTTCATGTCAGTTTCTTCTTCTTATGCAACTTCTCGCTTCACCCATAAGCGTGACTACCCAACACAATCACAAGCAGAAAAACTCATAAGAAGCCTTAACCTATTACCAAAGGACTCAGTTAACATTGTAAAAGGTGACCATGTTGGTTTTGTCCCAGGAAAGATCGTGGAGAAGAAGTTCTCGCTATTTTGTGATTCTGGGCCTTCTATTGAAGACCTTGGTCACCATGCTGGCTACTATTCACTTCCTCATTCCAAAGCTGCTAGAATGTTCTACTTTTTCTTTGAATCACGGAACAATAAGGATGATCCTGTAGTGATATGGTTGACTGGAGGACCAGGGTGTGGAAGTGAATTAGCTTTGTTTTATGAGAATGGTCCTTTTCATATTGCCAATAACTTGTCTCTTACATGGAATGATTACGGCTGGGACCAGGCATCAAATATTTTATTTGTTGACCAACCTACGGGTACAGGTTTCAGTTACTCTTCTGAGGAAAGTGACATTCGTCATGATGAAACAGGAATTAGCAATGACTTATATGACTTCTTGCAGGAGTTTTTCAAGGCGCATCCTGAGTTTGTTAAGAATGATTTTTATATTACTGGAGAATCATACGCTGGGCACTATGTTCCGGCACTTGCATCCCGGGTTAACCAAGGAAATAAACAAAATCAAGGAATCCATATAAACCTCAAGGGTTTTGCTATTGGTAATGGATTAACAAATCCTGCAATTCAATACCAAGCTTACCCAGATTTTGCATTAGACAATGGAATAATTACAAATGCTGAGTACGATAACATCAGCAAGTTAATCCCAGGGTGTGAACAAGCTGCTAAAACTTGCGAAAATCAAGGTGGACAAAGTTGCGCGACTGCGTTATATATTTGTCAAAACATATTTAGTCTTATCCTGGATTATGCTGGCAACATTAATTACTATGACATCAGAAAGAAGTGTGTGGGAGAATTGTGCTATGACTTCGGTAACGTGGAGGAGTTTTTAAACCAGAAGAAAGTGAAGAGTGCTTTAGGTGTGAGGGATGACTTGCAGTATGTTTTATGCAGTACAACAGTTCATGCTGCTATGCTTCAAGATTGGATGAGAAACATGGAAGTGGGGATTCCTTCTCTTCTTGAGGATGGAATCAAGTTGCTTGTGTATGCAGGGGAAGAAGATCTCATATGCAATTGGCTTGGGAATTCAAGGTGGGCTCATGCCATGGAGTGGTCAGGCCAAAAGGCCTTTGGAACATCTTCTACAGTGAAATTTGTGGTTGATGGTGTAGAAGCAGGGTCTCTTAATAGCTATGGACCTCTCTCTTTTCTCAAGGTGCATGGGGCTGGGCACATGGTCCCTATGGATCAACCAAAAGTTGCACTTCAAATGTTGAAAAGCTGGATGGGAGGGAAATTGAATGCCTCCTTCTATTAG	1497	0.4102	MALASSPSLSKVYLFLVLLLFMSVSSSYATSRFTHKRDYPTQSQAEKLIRSLNLLPKDSVNIVKGDHVGFVPGKIVEKKFSLFCDSGPSIEDLGHHAGYYSLPHSKAARMFYFFFESRNNKDDPVVIWLTGGPGCGSELALFYENGPFHIANNLSLTWNDYGWDQASNILFVDQPTGTGFSYSSEESDIRHDETGISNDLYDFLQEFFKAHPEFVKNDFYITGESYAGHYVPALASRVNQGNKQNQGIHINLKGFAIGNGLTNPAIQYQAYPDFALDNGIITNAEYDNISKLIPGCEQAAKTCENQGGQSCATALYICQNIFSLILDYAGNINYYDIRKKCVGELCYDFGNVEEFLNQKKVKSALGVRDDLQYVLCSTTVHAAMLQDWMRNMEVGIPSLLEDGIKLLVYAGEEDLICNWLGNSRWAHAMEWSGQKAFGTSSTVKFVVDGVEAGSLNSYGPLSFLKVHGAGHMVPMDQPKVALQMLKSWMGGKLNASFY*	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g1466	498	PRINTS	Carboxypeptidase C serine protease (S10) family signature	159	171	IPR001563	GO:0004185\|GO:0006508
	Gso11g1466	498	PRINTS	Carboxypeptidase C serine protease (S10) family signature	172	182	IPR001563	GO:0004185\|GO:0006508
	Gso11g1466	498	PRINTS	Carboxypeptidase C serine protease (S10) family signature	207	232	IPR001563	GO:0004185\|GO:0006508
	Gso11g1466	498	PRINTS	Carboxypeptidase C serine protease (S10) family signature	461	474	IPR001563	GO:0004185\|GO:0006508
	Gso11g1466	498	Pfam	Serine carboxypeptidase	93	490	IPR001563	GO:0004185\|GO:0006508
	Gso11g1466	498	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 48-RELATED	37	492	-	-
	Gso11g1466	498	SUPERFAMILY	alpha/beta-Hydrolases	94	492	IPR029058	-
	Gso11g1466	498	Gene3D	alpha/beta hydrolase	77	496	IPR029058	-
	Gso11g1466	498	ProSitePatterns	Serine carboxypeptidases, serine active site.	221	228	IPR018202	GO:0004185
	Gso11g1466	498	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	37	492	IPR001563	GO:0004185\|GO:0006508
	Gso11g1466	498	ProSitePatterns	Serine carboxypeptidases, histidine active site.	461	478	IPR033124	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g1466	Gso-Chr11	17014561	17018147	Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g1466	K16298		-	gmx:100798795	826.239

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso11g1466	11	17014561	17018147	Gso11g1466	11	17014561	17018147	ECH
	Gso11g1466	11	17014561	17018147	Gso12g1491	12	38138183	38141845	PCT
	Gso11g1466	11	17014561	17018147	Gso11g3350	11	49310400	49313881	PCT