Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1233 ATGAGAATGGAATTTCCCACTCTTAAACTTTTCTTCTTCATCTTCTTACTCCTCACATCAACCCATGCAAGATCCGCACCCCCAACCACAAACCTATTCCGAGAATACATTGGAGCTGAGTTCAACAACGTTAAATTCTCCGATGTCCCTATCAACCCAAGTGTTCAATTCCACTTCATTCTCTCCTTCGCTATCGACTACGACACGTCATCATCCTCCTCTCCCACCAACGGAAACTTCAATATCTTTTGGGACACCGGCAACCTAAGCCCCACCCAAGTTTCCGCCATCAAAACCAAACACCCAAACGTCAAAGTTGCCCTAAGTCTCGGAGGAGATAGCGTTGCAAATGGCTACGCTTACTTCAACCCCTCTTCAATCGATTCATGGGTTTCCAACGCGGTTTCTTCACTCACAAGCATCATCAAACAGTACAACCTAGACGGAATCGACATCGACTACGAGCATTTCAAGACGGACCCCGAAACCTTTTCTGAGTGCGTGGGGAGGCTAATCAAAACCCTAAAATCCAATGGGGTCATCAAATTTGCCTCCATTGCTCCATTTGACGATGAACAAGTTCAGAGCCACTACTTGGCTTTGTGGAAGAGTTATGGGAACCTTATAGATTATGTTAACTTCCAGTTTTATGCATATGACAAGGGCACAAGCGTGGCACAATTTATCGATTATTTCAACACACAGAGTTCGAAGTATAACGGTGGGAAGGTGTTGGTGAGTTTCATCAGTGATGGGAGTGGTGGGCTGGCACCAAATGATGGGTTCTTCACGGCATGTCATACCCTAAAGAGTGAGCAAAAACTTCATGGCATATTTGTGTGGAGTGCTGATGATTCCATGAAAAGCGGTTTCCCATATGAGAAGCAATCACAAGCCCTTTTAGCTATACCCTAG 915 0.4514 MRMEFPTLKLFFFIFLLLTSTHARSAPPTTNLFREYIGAEFNNVKFSDVPINPSVQFHFILSFAIDYDTSSSSSPTNGNFNIFWDTGNLSPTQVSAIKTKHPNVKVALSLGGDSVANGYAYFNPSSIDSWVSNAVSSLTSIIKQYNLDGIDIDYEHFKTDPETFSECVGRLIKTLKSNGVIKFASIAPFDDEQVQSHYLALWKSYGNLIDYVNFQFYAYDKGTSVAQFIDYFNTQSSKYNGGKVLVSFISDGSGGLAPNDGFFTACHTLKSEQKLHGIFVWSADDSMKSGFPYEKQSQALLAIP* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1233 304 PANTHER CHITINASE 2-LIKE 11 302 - -
Gso11g1233 304 PRINTS 2-S globulin family signature 30 43 IPR000677 -
Gso11g1233 304 PRINTS 2-S globulin family signature 77 92 IPR000677 -
Gso11g1233 304 PRINTS 2-S globulin family signature 94 112 IPR000677 -
Gso11g1233 304 PRINTS 2-S globulin family signature 264 283 IPR000677 -
Gso11g1233 304 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 31 304 IPR001223 GO:0005975
Gso11g1233 304 PANTHER 2, PUTATIVE, EXPRESSED-RELATED 11 302 - -
Gso11g1233 304 Pfam Glycosyl hydrolases family 18 58 221 IPR001223 GO:0005975
Gso11g1233 304 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 147 155 IPR001579 GO:0004553|GO:0005975
Gso11g1233 304 SUPERFAMILY (Trans)glycosidases 32 296 IPR017853 -
Gso11g1233 304 Gene3D Glycosidases 29 303 - -
Gso11g1233 304 CDD GH18_narbonin 32 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1233 Gso-Chr11 11215343 11216448 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1233 - - gmx:100810745 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1233 11 11215343 11216448 Gso11g1233 11 11215343 11216448 ECH
Gso15g0377 15 3395990 3397080 Gso11g1233 11 11215343 11216448 PCT
Gso11g3425 11 50203301 50204323 Gso11g1233 11 11215343 11216448 PCT
Gso11g1233 11 11215343 11216448 Gso15g0377 15 3395990 3397080 PCT
Gso11g1233 11 11215343 11216448 Gso11g3425 11 50203301 50204323 PCT