Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1229 ATGTCGGGGTTACTTAATTCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGATGGTGCTGGACGGTCTTTTGCTTCATCATTTTCTGGAGGTATTCAAGGATTGCACAATATTCATGGGAGCTTTAATGTTCCCAACATGCCCGGTACACTCACATCAAGAAACTCAACTATAAATAATGTACCATCGGGGGGTGTTCAACAACCCACTGGAAGCCTTTCTAGTGGAAGATTTACATCCAACAATCTCCCAGTTGCATTGTCTCAGCTATCTCATGGAAGTTCCCTTGGACATTCAGGAGTCACCAATAGAGGAGGTATAAGTGTTGTAGGAAACCCTGGATTTAGTAGTAGCACAAATGGAGTTGGTGGTTCTATTCCTGGGATTCTTCCTACATCTGCTGCAGTTGGTAACCGAAATGCTGTTCCAGGATTGGGAGTAAACCCAATTTTGGGAAATGCAGGTCCTCGAATCACAAGTTCTGTGGGAAACATGGTTGGAGGAGGGAATATTGGAAGGACTGGTGGAGGATTGTCTGTGCCTGGTCTCTCGTCTCGTCTAAATTTGGGTGCAAACAGTGGATCCGGTGGTTTAGGTATGCAAGGACAGAATCGATTGATGAGTGGTGTGCTTCCACAAGGGTCTCCGCAGGTAATTTCAATGCTAGGAAATTCTTATCCTAGTGGGGGTCCACTTTCCCAAAGCCATGTTCAAGCAGTGAGTAACTTGAACTCTATGGGTATGTTGAATGATATGAATTCTAATGACAGTTCACCTTTTGACATCAATGACTTCCCTCAACTGACAACTCGTCCTAGTTCTGCTGGAGGGCCTCAAGGACAGTTGGGTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGGTGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGACAATACTGTGCCAATGATGCAATCTCAGCATTTCTCTATGGGAAGGTCAGCTGGTTTCAGCTTAGGGGGTACATATTCATCACATCGAGCACAACAGCAACAGCATGCTCCTTCAGTCAGTAGTGGCAATGTCTCTTTTTCATCTGTTAACAACCAGGATATTCTCCATCTACATGGATCAGATATTTTCCCATCTTCACATTCGACCTATCATTCACAGACCAGTGGACCTCCTGGCATTGGATTAAGGCCGCTAAATTCTCCAAATACAGTTTCTGGTATGGGTTCATATGACCAGCTCATCCAGCAATATCAACAGCACCAAAATCAGTCCCAGTTCCGCCTTCAAATGTCAGCTGTAAATCAGTCTTTTAGGGATCAGGGCATGAAGTCTATTCAAACTGCACAACCAGCACCAGATCCATTTGGTTTGCTTGGCCTGTTAAGTGTGATCAGGATGAGTGATCCTGACCTGACATCTCTTGCTCTTGGAATTGATCTTACTACACTGGGGTTAAATTTGAATTCATCAGAAAATCTTCACAAGACCTTTGGGTCTCCATGGACTGATGAATCAGCTAAGGGAGATCCAGAGTTTACAGTGCCACAATGTTATTTTGCCAAACAGCCACCTGCTCTACATCAAGGTTATTTTTCCAAGTTTTCGGTGGAAACATTGTTTTACATATTTTATAGCATGCCCAAAGATGAAGCCCAATTATATGCCGCCAGTGAGCTTTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTATGGTTAATAAGAGTTCCCAACATGGAGCCGCTGGTTAAAACAAACACATATGAGAGAGGATCTTATCACTGTTTCGATCCAAGCATATTTGAAACCGTCCGCAAGGATAATTTTGTTCTACATTATGAAATGTTGGAAAAGAGACCACATCTGCCTCAACTTTGA 1944 0.428 MSGLLNSSLNGSASNLPDGAGRSFASSFSGGIQGLHNIHGSFNVPNMPGTLTSRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSLGHSGVTNRGGISVVGNPGFSSSTNGVGGSIPGILPTSAAVGNRNAVPGLGVNPILGNAGPRITSSVGNMVGGGNIGRTGGGLSVPGLSSRLNLGANSGSGGLGMQGQNRLMSGVLPQGSPQVISMLGNSYPSGGPLSQSHVQAVSNLNSMGMLNDMNSNDSSPFDINDFPQLTTRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNTVPMMQSQHFSMGRSAGFSLGGTYSSHRAQQQQHAPSVSSGNVSFSSVNNQDILHLHGSDIFPSSHSTYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQMSAVNQSFRDQGMKSIQTAQPAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWTDESAKGDPEFTVPQCYFAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAASELYNRGWFYHKEHRLWLIRVPNMEPLVKTNTYERGSYHCFDPSIFETVRKDNFVLHYEMLEKRPHLPQL* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1229 647 Pfam NOT2 / NOT3 / NOT5 family 516 638 IPR007282 GO:0006355
Gso11g1229 647 MobiDBLite consensus disorder prediction 46 77 - -
Gso11g1229 647 MobiDBLite consensus disorder prediction 399 428 - -
Gso11g1229 647 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 646 - -
Gso11g1229 647 MobiDBLite consensus disorder prediction 356 378 - -
Gso11g1229 647 Gene3D - 467 647 IPR038635 -
Gso11g1229 647 PANTHER CCR4 NOT-RELATED 2 646 IPR040168 GO:0030015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1229 Gso-Chr11 11162934 11170913 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1229 K12605 - gmx:100783662 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1229 11 11162934 11170913 Gso11g1229 11 11162934 11170913 ECH
Gso12g0612 12 5670727 5678442 Gso11g1229 11 11162934 11170913 GST
Gso15g0374 15 3371541 3379195 Gso11g1229 11 11162934 11170913 PCT
Gso11g1229 11 11162934 11170913 Gso15g0374 15 3371541 3379195 PCT