Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1110 ATGCAGAAGGCACCACTTGCACATTCCAATGAGTTTGCCTTGAAGGAGACCTCTCCCAAGATTGGTGCAGGGGCAGTAACAAGAGACAAGCTATCATGCACCTATGACCTTGTTGAACAGATGCAGTATCTCTATGTTCGTGTGGTCAAAGCCAAGGATTTACCTTCAAAAGATGTCACTGGAAGTCTCGATCCCTATGTTGAAGTGAAGCTTGGAAACTACAAGGGACTCACCAAGCACTTTGAGAAGAAGTCCAACCCTGAGTGGAATCAGGTCTTTGCATTCTCCAAAGACCGGATTCAAGCCTCGGTGTTGGAGGTTATTGTCAAGGATAAGGATGTTATTTCAGATGATTTTGTAGGGAGGATGTGGTTTGATCTCAATGAGATCCCAAAACGTGTTCCCCCAGATAGTCCATTGGCTCCACAATGGTACAGATTGGAAGATCGAAAGGGCGAAAAGGTGAAAGGAGAGATAATGCTTGCAGTTTGGATGGGGACTCAAGCAGATGAGGCATTTCCTGATTCTTGGCATTCTGATGCAGCAATGGTTGGCTCTGAAGCAGTTTCAAACATAAGGTCAAAAGTTTACCTCTCTCCCAAGCTTTGGTATGTCAGGGTCAATGTGATTGAAGCACAGGACTTGATACCAGGTGATAAAACCCGGTTTCCTGAAGTTTATGTGAAGATTAATCTAGGAAACCAGTTTTTAAGGACTAGAGTGTCTCAAAGTAAGACCATGAATCCCATGTGGAATGAGGACTTGATGTTGGTTGCTGCTGAGCCTTTTGAGGAGCCTTTGATTCTGAGTGTGGAAGACAGGCTTGGACCAAACAAAGATGAAGTATTGGGAAGGTGTGTGATCCCTTTGCAGATTGTGCAACGGAGGCTGGACCATAAGCCTGTGAACACTAGGTGGTTTAATCTTGAGAAGCATGTGGTTGTTGAAGGGGAAAAAAAGGAGATTAAATTTGCAAGCAGGATACATTTGAGGATGTGTTTGGATGGTGGTTTCCATGTGTTGGATGAATCAACTCATTATAGTAGTGATCTTAGGCCAACTGCTAAGCAATTATGGAAGCCTAACATTGGAATTCTAGAAGTGGGGATTATAAGTGCACAAGGGCTTATGCCAATGAAAACAAGAGATGGTAGAGGAACCACAGATGCTTATTGTGTGGCAAAATATGGACAAAAGTGGATCCGCACTAGGACTCTTGTGGATAGCTTTACTCCAAAGTGGAATGAGCAGTACACTTGGGAAGTGTTTGATCCATGTACTGTTATTACCATAGGGGTCTTTGACAACGGTCATATACAAGGAGGAGGAGAGAAAGGTGGTGGTGGATCAAAGGATTCTAGGATAGGGAAAGTGAGAATTAGGCTATCCACACTTGAAGCTGATAGAGTTTACACACACTCATATCCTCTTTTAGCACTTCACACTTCAGGTGTGAAGAAAACAGGAGAACTGCAATTGGCTGTGAGGTTCACTAACTCATCTTTCATCAACATGTTGTATTTGTATTCCCAGCCTTTGTTGCCAAAGATGCACTACATCCATCCTCTATCTGTGATTCAGCTAGACAGTCTGAGGCATCAGGCGATGCAGATTGTATCAATGAGGTTGAGTAGAGCTGAGCCACCCCTAAGCAAAGAGGTTGTAGAATACATGCTTGATGTGGATTCACACATGTGGAGTATGAGAAGGAGCAAGGCTAATTTCTTCAGGATAATGAAAGTTCTAAGTGGTTTGGTAGCATTTGGAAGGTGGTTTGATCAGATATGCAATTGGAAAAACCCCATCACCACCATACTAATTCATGTCCTTTTCATAATATTGGTTCTCTACCCTGAGCTAATACTCCCCACAATCTTCTTGTACCTGTTCTTGATTGGAATTTGGAACTTCAGATGGAGGCCTAGACACCCTCCACACATGGACACTAGACTGTCTCATGCTGATGCTGCTCATCCTGATGAACTGGATGAAGAGTTCGACACATTCCCAACTTCGCGGTCATCGGATATCGTTAGGATGAGATACGATCGTTTGAGAAGCATTGCAGGGAGAGTCCAAAGTGTTGTAGGTGACTTAGGTACACAAGGAGAAAGGTTCCAAAGTCTGCTAAGTTGGAGAGATCCAAGGGCTACCACACTCTTCGTCACATTCTGTTTCGTTGCTGCTATAGTTCTCTATGTTACTCCTTTTCAGGTTGTGTCACTTCTCATTGGCTTCTTTATGCTAAGGCACCCCAGATTCCGCCACAAACTTCCATCAGTTCCTCTCAATTTCTTTAGGAGGTTGCCTGCTAGATCAGACAGCATGTTGTAA 2334 0.4366 MQKAPLAHSNEFALKETSPKIGAGAVTRDKLSCTYDLVEQMQYLYVRVVKAKDLPSKDVTGSLDPYVEVKLGNYKGLTKHFEKKSNPEWNQVFAFSKDRIQASVLEVIVKDKDVISDDFVGRMWFDLNEIPKRVPPDSPLAPQWYRLEDRKGEKVKGEIMLAVWMGTQADEAFPDSWHSDAAMVGSEAVSNIRSKVYLSPKLWYVRVNVIEAQDLIPGDKTRFPEVYVKINLGNQFLRTRVSQSKTMNPMWNEDLMLVAAEPFEEPLILSVEDRLGPNKDEVLGRCVIPLQIVQRRLDHKPVNTRWFNLEKHVVVEGEKKEIKFASRIHLRMCLDGGFHVLDESTHYSSDLRPTAKQLWKPNIGILEVGIISAQGLMPMKTRDGRGTTDAYCVAKYGQKWIRTRTLVDSFTPKWNEQYTWEVFDPCTVITIGVFDNGHIQGGGEKGGGGSKDSRIGKVRIRLSTLEADRVYTHSYPLLALHTSGVKKTGELQLAVRFTNSSFINMLYLYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSMRLSRAEPPLSKEVVEYMLDVDSHMWSMRRSKANFFRIMKVLSGLVAFGRWFDQICNWKNPITTILIHVLFIILVLYPELILPTIFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRSSDIVRMRYDRLRSIAGRVQSVVGDLGTQGERFQSLLSWRDPRATTLFVTFCFVAAIVLYVTPFQVVSLLIGFFMLRHPRFRHKLPSVPLNFFRRLPARSDSML* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1110 777 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 203 355 IPR035892 -
Gso11g1110 777 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 8 777 - -
Gso11g1110 777 CDD C2C_MCTP_PRT_plant 204 353 - -
Gso11g1110 777 Pfam Plant phosphoribosyltransferase C-terminal 622 777 IPR013583 -
Gso11g1110 777 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN 8 777 - -
Gso11g1110 777 Gene3D C2 domain 33 166 IPR035892 -
Gso11g1110 777 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 43 181 IPR035892 -
Gso11g1110 777 CDD C2D_MCTP_PRT_plant 365 494 - -
Gso11g1110 777 CDD C2B_MCTP_PRT_plant 43 167 - -
Gso11g1110 777 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 364 507 IPR035892 -
Gso11g1110 777 ProSiteProfiles C2 domain profile. 183 307 IPR000008 -
Gso11g1110 777 ProSiteProfiles C2 domain profile. 25 145 IPR000008 -
Gso11g1110 777 Gene3D C2 domain 362 501 IPR035892 -
Gso11g1110 777 ProSiteProfiles C2 domain profile. 347 475 IPR000008 -
Gso11g1110 777 Gene3D C2 domain 188 334 IPR035892 -
Gso11g1110 777 SMART C2_3c 43 139 IPR000008 -
Gso11g1110 777 SMART C2_3c 204 302 IPR000008 -
Gso11g1110 777 SMART C2_3c 365 474 IPR000008 -
Gso11g1110 777 Pfam C2 domain 203 309 IPR000008 -
Gso11g1110 777 Pfam C2 domain 43 136 IPR000008 -
Gso11g1110 777 Pfam C2 domain 364 477 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1110 Gso-Chr11 9960743 9963730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1110 1 777 Lipid Metabolism Gene Families AT3G57880 81.620 0.0 1360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1110 - - gmx:100788273 1547.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1110 11 9960743 9963730 Gso11g1110 11 9960743 9963730 ECH
Gso15g0281 15 2561624 2564866 Gso11g1110 11 9960743 9963730 PCT
Gso11g3526 11 51083587 51086820 Gso11g1110 11 9960743 9963730 PCT
Gso11g1110 11 9960743 9963730 Gso15g0281 15 2561624 2564866 PCT
Gso11g1110 11 9960743 9963730 Gso11g3526 11 51083587 51086820 PCT