Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0545 ATGAGTTCTCTGAATCTTGGAACATGGCCTCGTCCCACCTCTATGTTGAACACACCTTCACATCTCCTTCCCCTTTTTCACACTCTCACTCTCACAACAACGCTTCCCAAACTCGCAAGTGGAACCCCAAAACTAATATCTTCTTTTCCCCTCGTCTCTGCTGTGCCCACTAAGGAACACACAGTCACAACCCAGGAAATTCAACTCCAAGACACGCCGCTCAACTTCGATTTCAAGGGCTACATGATCGCCAAGGCCCACACGGTAAACCAAGCCTTGGACGCCGCCATTGCGTTGAGGGACCCACACAAGATCCACCAAGCCATGCGCTACTCCCTCCTCGCCGGCGGCAAGAGGGTCCGCCCCGTGCTCTGCATCGCCGCATGCGAGCTCGTCGGTGGCACAGAGGCCACCGCCATCCCCGCCGCCTGCGCCGTCGAGATGATCCACACCATGTCGCTCATCCACGACGACCTGCCATGTATGGACAACGACGACCTCCGCCGCGGAAAGCCGACCAACCACAAGGTCTACGGCGAGGACGTGGCGGTCCTCGCCGGCGACGCGCTCCTCGCCTTCGCGTTCGAGCACGTGGCAGCGTCCACGGAGGGAGTGTCGCCGTCACGCGTGGTTCGAGCGATTGGGGAGTTAGCGAAGTCGATCGGTACGGAAGGGCTTGTGGCTGGACAAGTGGTGGATATAGATTCGGAGGGGGTGGCGAATGTGGGGCTGGAGACGCTGGAATTCATTCACGTGCACAAAACGGCGGCGTTGCTGGAAGCTGCGGTTGTGTTGGGGGCAATAGTGGGAGGTGGGAGCGACGAGGAGGTTGAGAAATTAAGGAAGTTCGCCAGGTGCATTGGGTTGTTGTTTCAGGTTGTGGACGACATTCTGGATGTGACGAAGTCGTCGGAGGAATTGGGGAAGACGGCGGGGAAGGATTTGGTGGCTGATAAGGTTACTTATCCCAAGCTATTGGGGATAGATAAGTCAAAGGAATTTGCTCAAGAATTGTTAAAGGATGCCAAGGAACAATTGTCTGGGTTCGATCCTCGAAAGGCGGCTCCGTTGTTTGCTTCAATCAATCACATTGCTCACAGGCAACATTGA 1110 0.5604 MSSLNLGTWPRPTSMLNTPSHLLPLFHTLTLTTTLPKLASGTPKLISSFPLVSAVPTKEHTVTTQEIQLQDTPLNFDFKGYMIAKAHTVNQALDAAIALRDPHKIHQAMRYSLLAGGKRVRPVLCIAACELVGGTEATAIPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLAFAFEHVAASTEGVSPSRVVRAIGELAKSIGTEGLVAGQVVDIDSEGVANVGLETLEFIHVHKTAALLEAAVVLGAIVGGGSDEEVEKLRKFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVADKVTYPKLLGIDKSKEFAQELLKDAKEQLSGFDPRKAAPLFASINHIAHRQH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0545 369 Gene3D Farnesyl Diphosphate Synthase 70 369 IPR008949 -
Gso11g0545 369 SFLD Polyprenyl Transferase Like 82 367 - -
Gso11g0545 369 ProSitePatterns Polyprenyl synthases signature 1. 154 170 IPR033749 -
Gso11g0545 369 Pfam Polyprenyl synthetase 104 340 IPR000092 GO:0008299
Gso11g0545 369 SUPERFAMILY Terpenoid synthases 79 351 IPR008949 -
Gso11g0545 369 CDD Trans_IPPS_HT 105 367 IPR000092 GO:0008299
Gso11g0545 369 SFLD Isoprenoid Synthase Type I 82 367 - -
Gso11g0545 369 ProSitePatterns Polyprenyl synthases signature 2. 287 299 IPR033749 -
Gso11g0545 369 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 368 - -
Gso11g0545 369 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC-LIKE 1 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0545 Gso-Chr11 4862238 4870507 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0545 K13789 - gmx:100778289 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0545 11 4862238 4870507 Gso11g0545 11 4862238 4870507 ECH
Gso11g0545 11 4862238 4870507 Gso2g0493 2 5213204 5214674 PCT
Gso11g0545 11 4862238 4870507 Gso16g1136 16 30268102 30269747 PCT
Gso2g0493 2 5213204 5214674 Gso11g0545 11 4862238 4870507 PCT
Gso16g1136 16 30268102 30269747 Gso11g0545 11 4862238 4870507 PCT