Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g02203 ATGTCTCAGACCCCACCCCAAACCCTCGATTCCGATGAGGCGCCGCAAAccacccacgccacccaaaccccttccctcctccacctctccttcaatcaggactccgggtgcttcgctgccgccaccgaccgcggcttccgcatctacaactgcgaccccttccgcgagatcttccgccgcgacttcggccccggcggcggcgtcggcctcgtCCACATGCTCTTCCGCTGCAACATCCTCGCCTTCGTCGGCGGCGGCTCCTCCCCCGACCCCCGCTACCCTCCCAACAAGGTCATGATCTGGGACGACCACCTGTCCCGCTGCATCGGCGAGCTCTCCTTCCGCTCGGAGGTCAAGGGCGTCCGCCTCCGCCGCGACCGAATCGTCGTCGTCCTCGCCCACAAGATCTTCGTCTACAACTTCGCCGATCTCAAGGTGCTGCACCAAATCGAGACCATTGCAAACCCTAAGGGCCTATGCGACCTTTCACATGTCTCCGCCACCATGGTGTTGGTCTGCCCCGGGTTGCAAAAGGGGCAGGTTAGGGTTGAGCACTACGCCTCTAAAAGAACCAAGTTCATCATGGCTCATGATTCCCGAATCGCGTGTTTTGCACTCACGCACGATGGCAGGTTGCTTGCAACCGCCAGCTCCAAGGGCACACTCATTAGGCTCTTCAATACCCTCGACGGTTCACTGCTCCAAGAGGTACGGAGGGGTGCAGACAGAGCAGAGATATACAGCCTTGCTTTTTCTCCTACTGCACAGTGGCTGGCTGTCTCAAGTGACAAGGGGACCGTTCATGTCTTCAACCTCAAGGTTGATTCCGGACTGTTGGGGCATGATAGATCGCACAGTACTTCTGAGGCAAATCTTGCTAGCCCCACCGCGATGTCGTCTCTTTCCTTTTTTAAAGGTGTGCTACCCAAGTATTTTAGCTCAGAGTGGTCTGTGGCTCAATTTCGCTTGCAAGAAGGTTTGCAATATGTTGTTGCATTTGGCCATCAAAAGAATACAGTTGTAATACTAGGCATGGATGGCAGCTTCTATCGATGTCAGTTTGATTCTGCAGCTGGTGGAGAGATGACCCAACTTGAATATTACAATTTCCTAAAGGCAGAGGAGACATTCTAG 1134 0.4577 MSQTPPQTLDSDEAPQTTHATQTPSLLHLSFNQDSGCFAAATDRGFRIYNCDPFREIFRRDFGPGGGVGLVHMLFRCNILAFVGGGSSPDPRYPPNKVMIWDDHLSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFADLKVLHQIETIANPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTHDGRLLATASSKGTLIRLFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLLGHDRSHSTSEANLASPTAMSSLSFFKGVLPKYFSSEWSVAQFRLQEGLQYVVAFGHQKNTVVILGMDGSFYRCQFDSAAGGEMTQLEYYNFLKAEETF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g02203 377 Gene3D - 20 358 IPR015943 GO:0005515
Gma20g02203 377 PANTHER AUTOPHAGY-RELATED PROTEIN 18A-LIKE ISOFORM X1 12 377 - -
Gma20g02203 377 MobiDBLite consensus disorder prediction 1 20 - -
Gma20g02203 377 Pfam WD domain, G-beta repeat 240 271 IPR001680 GO:0005515
Gma20g02203 377 SUPERFAMILY WD40 repeat-like 24 273 IPR036322 GO:0005515
Gma20g02203 377 SMART WD40_4 187 227 IPR001680 GO:0005515
Gma20g02203 377 SMART WD40_4 230 271 IPR001680 GO:0005515
Gma20g02203 377 SMART WD40_4 2 50 IPR001680 GO:0005515
Gma20g02203 377 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 12 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g02203 Gma-Chr20 49142156 49145692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g02203 K22991 - gmx:100787427 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01501 10 42124108 42127600 Gma20g02203 20 49142156 49145692 ECH
Gma20g02203 20 49142156 49145692 Gma20g02203 20 49142156 49145692 ECH
Gma10g01501 10 42124108 42127600 Gma20g02203 20 49142156 49145692 GST
Gma19g01466 19 43881792 43888307 Gma20g02203 20 49142156 49145692 PCT
Gma03g01403 03 40156394 40159658 Gma20g02203 20 49142156 49145692 PCT