Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01578 ATGACTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCACGAAATATCTGAAAATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTCATGCTGCGTGCAAAAAATCAGGCTCTTATCCAAATGCAAGATGTTCCTTCTGCAGTTAATGCCTTACAATTTTATGCAAATGTTCAGCCAAGCATAAGGGGGAGGAATGTTTATGTTCAATTTTCCTCACATCAGGAATTAACAACAATGGAGCAAAGTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTCACAGTTCATCACATGCTGTATCCTATGACAGTGGATGTGCTGTATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCACGTCAGAGTGCTGTTGCGGCAAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGGGACTTCACAAACCCAAATCTCCCTACAGAGCAGAAAGGAAGACCTTCACAACCTGGATATGGTGATGCAGGAAATATGTATGCTGCTCAAGGTTCTGGAGCCAGGGCAGTTGGATTTCCACAGATGGCAAATGCTGCAGCCATTGCAGCTGCCTTTGGGGGAGGTCTACCTCCTGGAATAACTGGGACAAATGACAGGTGTACAGTTCTTGTATCAAATCTTAATCCTGATAGAATTGATGAGGATAAACTATTCAACCTGTTCTCTATTTATGGGAATATTGTGAGAATTAAACTTCTCCGAAATAAACCAGATCATGCACTTATTCAGATGGGAGATGGTTTTCAAGCAGAATTGGCTGTACACTTTCTGAAGGGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCGAACATAACCCAAGGTGCTGACACACATGAATACATCAATTCAAATCTCAATCGTTTCAACCGTAACGCAGCCAAAAACTACCGGTACTGCTGCTCCCCAACAAAGATGATCCATTTGTCCACACTCCCACAAGACATCACTGAAGAGGAGATTGTGAGCCTTGTAGAGGAACATGGAACCATTGTCAACAGCAAAGTCTTTGAGATGAACGGGAAAAAACAGGCTCTGGTTCAGTTTGGGAATGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGCATGCAAGCACACTTTCTGGCTCAGTAATCCGTATCTCCTTTTCACAGTTGCAGAATATATGA 1332 0.4287 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTTMEQSQGRGDEPNRILLVTVHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVAARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDAGNMYAAQGSGARAVGFPQMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFEKRLEVNFSKHPNITQGADTHEYINSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLVEEHGTIVNSKVFEMNGKKQALVQFGNEEQATEALVCKHASTLSGSVIRISFSQLQNI 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01578 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Gma20g01578 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 440 IPR000504 GO:0003723
Gma20g01578 443 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 442 - -
Gma20g01578 443 Gene3D - 253 348 IPR012677 -
Gma20g01578 443 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 442 - -
Gma20g01578 443 CDD RRM1_PTBPH3 6 80 IPR034795 -
Gma20g01578 443 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Gma20g01578 443 CDD RRM3_PTBPH3 255 330 IPR034797 -
Gma20g01578 443 Pfam RRM-like domain 95 174 IPR021790 -
Gma20g01578 443 Gene3D - 97 201 IPR012677 -
Gma20g01578 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 340 - -
Gma20g01578 443 SUPERFAMILY RNA-binding domain, RBD 254 439 IPR035979 GO:0003676
Gma20g01578 443 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 439 IPR006536 GO:0003723|GO:0005634|GO:0006397
Gma20g01578 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Gma20g01578 443 Gene3D - 349 443 IPR012677 -
Gma20g01578 443 Gene3D - 1 96 IPR012677 -
Gma20g01578 443 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Gma20g01578 443 MobiDBLite consensus disorder prediction 185 202 - -
Gma20g01578 443 CDD RRM4_PTBPH3 359 437 - -
Gma20g01578 443 MobiDBLite consensus disorder prediction 185 214 - -
Gma20g01578 443 SMART rrm1_1 101 170 IPR000504 GO:0003723
Gma20g01578 443 SMART rrm1_1 7 76 IPR000504 GO:0003723
Gma20g01578 443 SMART rrm1_1 257 326 IPR000504 GO:0003723
Gma20g01578 443 SMART rrm1_1 367 436 IPR000504 GO:0003723
Gma20g01578 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Gma20g01578 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 434 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01578 Gma-Chr20 42862710 42870522 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01578 K14948 - gmx:100819672 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02136 10 48849575 48856597 Gma20g01578 20 42862710 42870522 GST
Gma16g01478 16 34048037 34056535 Gma20g01578 20 42862710 42870522 PCT
Gma02g00724 02 6982748 6988016 Gma20g01578 20 42862710 42870522 PCT
Gma20g01578 20 42862710 42870522 Gma16g01478 16 34048037 34056535 PCT
Gma20g01578 20 42862710 42870522 Gma02g00724 02 6982748 6988016 PCT