Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01478 ATGGCTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAAAATGATTTGCTTCAACTATTTCAGCCTTTTGGAGTAATAACAAAGCTTGTGATGTTGCGTGCCAAAAATCAGGCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATGTCCAGCCAAGCATAAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCACATCAGGAACTAACTACAATGGATCAAAATCAAGCACGAGAAGACGAGCCAAATCGAATTCTCTTAGTTACAGTTCATCACATGCTGTATCCTATAACAGCGGATGTGCTACATCAAGTGTTTTCTCCCCATGGATTTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAAGCTCTAATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCAGAAGTACTCTTCAGGGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAGGGACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAACCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAGGTGGGTTCTCTCAGATGGCCAATGCTGCGGCAATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATTAAACTTCTCCGAAATAAGCCAGATCATGCACTTATCCAAATGGGAGATGGTTTCCAAGCTGAATTGGCAGTACATTTTCTGAAGGGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCGAAGCATGCGAACATAACCCAAGGTGCTGATACACATGAGTATGTCAATTCAAATCTCAATCGATTCAATCGTAATGCTGCCAAGAACTATCGGTACTGCTGCTCACCGACAAAAATGGTCCACTTGTCCACCCTCCCGCAAGACATAACTGAAGAGGAGGTTGTAAGCCTTTTGGAGGAGCATGGAACCATTGTCAACAGCAAGGTCTTTGAGATGAATGGAAAAAAACAGGCACTTGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGCATGCAAGTCCACTTTCTGGATCAGTTGTTCGCATCTCCTTTTCCCAGTTGCAGAATATATGA 1320 0.4295 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTTMDQNQAREDEPNRILLVTVHHMLYPITADVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAAGMYSGARAGGFSQMANAAAIAAAFGGGLPPGITGTNERCTVLVANLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNYSKHANITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMVHLSTLPQDITEEEVVSLLEEHGTIVNSKVFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVVRISFSQLQNI 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01478 439 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Gma16g01478 439 Gene3D - 347 439 IPR012677 -
Gma16g01478 439 Gene3D - 1 97 IPR012677 -
Gma16g01478 439 MobiDBLite consensus disorder prediction 186 210 - -
Gma16g01478 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Gma16g01478 439 MobiDBLite consensus disorder prediction 186 205 - -
Gma16g01478 439 CDD RRM1_PTBPH3 6 80 IPR034795 -
Gma16g01478 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Gma16g01478 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 428 IPR000504 GO:0003723
Gma16g01478 439 SUPERFAMILY RNA-binding domain, RBD 250 435 IPR035979 GO:0003676
Gma16g01478 439 Pfam RRM-like domain 97 174 IPR021790 -
Gma16g01478 439 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 438 - -
Gma16g01478 439 SMART rrm1_1 7 76 IPR000504 GO:0003723
Gma16g01478 439 SMART rrm1_1 253 322 IPR000504 GO:0003723
Gma16g01478 439 SMART rrm1_1 101 170 IPR000504 GO:0003723
Gma16g01478 439 SMART rrm1_1 363 432 IPR000504 GO:0003723
Gma16g01478 439 CDD RRM3_PTBPH3 251 326 IPR034797 -
Gma16g01478 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 362 436 IPR000504 GO:0003723
Gma16g01478 439 Gene3D - 246 343 IPR012677 -
Gma16g01478 439 Gene3D - 98 201 IPR012677 -
Gma16g01478 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Gma16g01478 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 337 - -
Gma16g01478 439 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
Gma16g01478 439 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01478 Gma-Chr16 34048037 34056535 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01478 K14948 - gmx:100798234 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01478 16 34048037 34056535 Gma16g01478 16 34048037 34056535 ECH
Gma16g01478 16 34048037 34056535 Gma02g00724 02 6982748 6988016 GST
Gma16g01478 16 34048037 34056535 Gma10g02136 10 48849575 48856597 PCT
Gma16g01478 16 34048037 34056535 Gma20g01578 20 42862710 42870522 PCT
Gma10g02136 10 48849575 48856597 Gma16g01478 16 34048037 34056535 PCT
Gma20g01578 20 42862710 42870522 Gma16g01478 16 34048037 34056535 PCT