Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02136 ATGACCGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGCCACGAAATATCTGAAAATGACTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTCATGCTGCGTGCAAAAAATCAGGCTCTTATCCAAATGCAAGATGTTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATGTTCAGCCAAGCATAAGGGGGAGGAATGTTTATGTTCAATTTTCCTCACATCAGGAATTAACAACAATGGATCAAAGTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTCACAGTTCATCACATGTTGTATCCTATGACTGTGGATGTGCTGTATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCACGTCAGAGTGCTGTTGCAGCAAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGGGACTTCACAAACCCAAATCTCCCCACAGAGCAGAAAGGCAGACCTTCACAACAGCCTGGATATGGTGATGCAGGAAACATGTATGCTGCCCAGGGTTCAGGAGCCAGGGCAGGTGCTAAATATTTTAAACTGCTTTGGTTGATGGCAAATGCTGCAGCCATTGCAGCTGCCTTTGGGGGAGGTCTGCCTCCTGGAATAACTGGGACAAATGACAGGTGTACAGTTCTTGTATCAAATCTTAATCCTGATAGAATTGATGAGGATAAACTATTCAACTTGTTCTCTATTTATGGGAACATTATGAGAATTAAACTTCTCCGAAATAAGCCAGATCATGCACTTATCCAGATGGGAGATGGTTTTCAAGCAAAACTGGCTGTACACTTTCTGAGGGGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCAAAAATAACCCCAGGTGCTGACACACATGAATACATCAGTTCAAATCTCAATCGTTTCAACCGTAATGCAGCCAAAAACTATCGGTATTGCTGCCCCCCAACAAAGATGATTCATTTGTCCACACTTCCACTAGACATCACTGAAGAGGAGATTGTGAGCCTTGTAGAGGAACATGGAATCATTGTCAACAGCAAAGTCTTCGAGATGAACGGGAAAAAGCAGGCTCTGGTTCAGTTTGAAAATGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGCATGCAAGTACACTTTCTGGCTCAGTAATCCGTATCTCCTTTTCGCAGTTACAGAATATATGA 1350 0.4267 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTTMDQSQGRGDEPNRILLVTVHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVAARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQQPGYGDAGNMYAAQGSGARAGAKYFKLLWLMANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIMRIKLLRNKPDHALIQMGDGFQAKLAVHFLRGAMLFEKRLEVNFSKHPKITPGADTHEYISSNLNRFNRNAAKNYRYCCPPTKMIHLSTLPLDITEEEIVSLVEEHGIIVNSKVFEMNGKKQALVQFENEEQATEALVCKHASTLSGSVIRISFSQLQNI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02136 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 440 IPR000504 GO:0003723
Gma10g02136 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Gma10g02136 449 SMART rrm1_1 101 170 IPR000504 GO:0003723
Gma10g02136 449 SMART rrm1_1 7 76 IPR000504 GO:0003723
Gma10g02136 449 SMART rrm1_1 373 442 IPR000504 GO:0003723
Gma10g02136 449 SMART rrm1_1 263 332 IPR000504 GO:0003723
Gma10g02136 449 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 445 IPR006536 GO:0003723|GO:0005634|GO:0006397
Gma10g02136 449 SUPERFAMILY RNA-binding domain, RBD 260 444 IPR035979 GO:0003676
Gma10g02136 449 MobiDBLite consensus disorder prediction 186 205 - -
Gma10g02136 449 CDD RRM1_PTBPH3 6 80 IPR034795 -
Gma10g02136 449 Pfam RRM-like domain 95 174 IPR021790 -
Gma10g02136 449 CDD RRM4_PTBPH3 365 443 - -
Gma10g02136 449 Gene3D - 361 446 IPR012677 -
Gma10g02136 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 344 - -
Gma10g02136 449 MobiDBLite consensus disorder prediction 186 214 - -
Gma10g02136 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 446 IPR000504 GO:0003723
Gma10g02136 449 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Gma10g02136 449 Gene3D - 259 354 IPR012677 -
Gma10g02136 449 Gene3D - 98 201 IPR012677 -
Gma10g02136 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Gma10g02136 449 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 448 - -
Gma10g02136 449 Gene3D - 1 97 IPR012677 -
Gma10g02136 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Gma10g02136 449 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Gma10g02136 449 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02136 Gma-Chr10 48849575 48856597 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02136 K14948 - gmx:100805732 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02136 10 48849575 48856597 Gma10g02136 10 48849575 48856597 ECH
Gma10g02136 10 48849575 48856597 Gma20g01578 20 42862710 42870522 GST
Gma16g01478 16 34048037 34056535 Gma10g02136 10 48849575 48856597 PCT
Gma02g00724 02 6982748 6988016 Gma10g02136 10 48849575 48856597 PCT
Gma10g02136 10 48849575 48856597 Gma16g01478 16 34048037 34056535 PCT
Gma10g02136 10 48849575 48856597 Gma02g00724 02 6982748 6988016 PCT