Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00916 ATGGCCAAGGAAGCTTCTCTGTGCCTCTTGTTCCTCCTCTCCTCTCTCACTATCTCCTGTTCTGGATCTGTGGAGGGTTTTTCCTACCGTGAGAGAGGACACACTTCAACATCTGCTAGAACCATATCATTCCTCCAGCAAAGCAACGTTCCCCCGTCTCAGATTCGAATTTTCGTCACAGATCATAGGATTTTGAGCACTCTCAGCTACTCCAAAGTGCCAACAGATGTTTACTTGAACAAAAGTCAAGTTGAAAATTTCATTACTTCAAAACCTTCTGAACTAAAAGCTCATCTACTTAACATTCTCCAAAATTCAAACATCAAGAGCATCATTGCTAGCTGTGGCAGTGAGGGCTTAGCACAAAATGAGATGCCTTTGTTCTTACATGCTTTGATATCAATTAGTTCAGTTCTTAGAGAGCTTCACTTAGGGAGGGAGGTAAAAGTCTCAGTAGCATTTCCACTTTCATTCTTAGAAAAGTTGAATGCATCACATGAAAACAATATTCGTAGGATTCTTTCAGTTATAAAGGAAATGAAATCCTTTGTCATGGTAGAAGACTACATTGATGGAGAATTCAGCATCGGGGATCACTTTGTTCATGCTATCATCAAACGAGCCACTCTTGCTGCTTCCATTCTTCCTTGCAAGGATGTTCCCATTGTTCTGGCAATAAAAAGCACAGTTATCTTCCCTTCAATGGAATTAGCTCAATTTAGTGAGAGAGTGTCCAAATATCTAGAATCCAAAACTCATATTAGAAAAAGAATAGCAGCATTATACATAGAGGTGCACAGAACAGAAGATTTTGCTAGCAAAAAGCTCAAAAGGAGAAGTCTAGATGACACAACCAACCCAACAAACACAGTTTTCCCCACAAATCCAGCATCATCCACACCGATCATCACACCACCAGATACACCAACCATCATAACAGTTCCTGCTACTAATCCTGTCACAATTTCCCCTTCCAATCCTGCTGCAATGCCTGTGACAGTTCCTTCCACCACACCAGTGCCTATACCTCCCACAAATCCAGCCAATTCACCAGTACCTGTGAGCAATCCAGCTACAACAACTCCTGTAGCAACACCACCGCCAGTAACCATCCCTGTGACATCTTATCCACCTCCATCAGGAAATGTTCCCGTCGTAAACCCGCAACCGCAACCACCTCCTGCAAACACTAATGCTCCTGCCATTCAGGGGCAGAGTTGGTGTGTTGCAAAGCAAGGAGCCCCTGAAGCTTCTCTTCAATCAGCTTTGGACTATGCTTGTGGAATGGGTGGTGCAGATTGTTCTCAAATTCAGCAGGGTGGAAATTGTTACAGTCCAGTTACTTTGCAGAGCCATGCTTCTGTTGCCTTCAACAGCTACTACCAGAAGAATCCAGCTCCAACAAGCTGTGACTTTGGAGGGACTGCCACCTTAGTTAACACAAATCCAAGCACGGGTTCGTGCATCTTCCCATCATCATCATCAACAACAACAACAACGCCAAAGTCATCATCACCCCCAACACCACCTACGCAATCAAGTCCAACAACACTACCACCACCAAGTCCATTAACACCTGCACCATCTATTCCAACAGCACCACCAACATCTTCATCTTCAGGAACAGGCCCTTTCGGGTATGGTGCCCCACCTTCAGTGTTAAATTCAAGCAATCCAGCGTCAGGTATAATGCCAGGTTTTGCTTCTGATAGCCCTCCTGTTGTAAATACCACTTCGGCCTCGCGTTCTGTGAGTTTGAGACCTTTTGTTGGCTTCACTATTCTGATGGTATCATTTGTCACTACGAGACTCAGTATGCACCCATAG 1827 0.4428 MAKEASLCLLFLLSSLTISCSGSVEGFSYRERGHTSTSARTISFLQQSNVPPSQIRIFVTDHRILSTLSYSKVPTDVYLNKSQVENFITSKPSELKAHLLNILQNSNIKSIIASCGSEGLAQNEMPLFLHALISISSVLRELHLGREVKVSVAFPLSFLEKLNASHENNIRRILSVIKEMKSFVMVEDYIDGEFSIGDHFVHAIIKRATLAASILPCKDVPIVLAIKSTVIFPSMELAQFSERVSKYLESKTHIRKRIAALYIEVHRTEDFASKKLKRRSLDDTTNPTNTVFPTNPASSTPIITPPDTPTIITVPATNPVTISPSNPAAMPVTVPSTTPVPIPPTNPANSPVPVSNPATTTPVATPPPVTIPVTSYPPPSGNVPVVNPQPQPPPANTNAPAIQGQSWCVAKQGAPEASLQSALDYACGMGGADCSQIQQGGNCYSPVTLQSHASVAFNSYYQKNPAPTSCDFGGTATLVNTNPSTGSCIFPSSSSTTTTTPKSSSPPTPPTQSSPTTLPPPSPLTPAPSIPTAPPTSSSSGTGPFGYGAPPSVLNSSNPASGIMPGFASDSPPVVNTTSASRSVSLRPFVGFTILMVSFVTTRLSMHP 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00916 608 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 141 573 IPR044965 GO:0004553|GO:0005975
Gma20g00916 608 MobiDBLite consensus disorder prediction 283 298 - -
Gma20g00916 608 MobiDBLite consensus disorder prediction 487 553 - -
Gma20g00916 608 Gene3D Glycosidases 26 189 - -
Gma20g00916 608 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Gma20g00916 608 MobiDBLite consensus disorder prediction 534 553 - -
Gma20g00916 608 MobiDBLite consensus disorder prediction 487 502 - -
Gma20g00916 608 Pfam X8 domain 407 477 IPR012946 -
Gma20g00916 608 PRINTS Proline rich extensin signature 284 296 - -
Gma20g00916 608 PRINTS Proline rich extensin signature 315 336 - -
Gma20g00916 608 PRINTS Proline rich extensin signature 337 353 - -
Gma20g00916 608 PRINTS Proline rich extensin signature 354 371 - -
Gma20g00916 608 PRINTS Proline rich extensin signature 372 397 - -
Gma20g00916 608 MobiDBLite consensus disorder prediction 281 303 - -
Gma20g00916 608 MobiDBLite consensus disorder prediction 503 533 - -
Gma20g00916 608 SMART X8_cls 406 490 IPR012946 -
Gma20g00916 608 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 141 573 - -
Gma20g00916 608 Gene3D - 401 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00916 Gma-Chr20 35696128 35698683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00916 368 493 Glycoside Hydrolase AT2G05790 47.287 7.46e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00916 - - gmx:100781884 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00916 20 35696128 35698683 Gma20g00916 20 35696128 35698683 ECH
Gma10g01423 10 41288898 41292220 Gma20g00916 20 35696128 35698683 GST
Gma03g02107 03 46613109 46616128 Gma20g00916 20 35696128 35698683 PCT
Gma20g00916 20 35696128 35698683 Gma03g02107 03 46613109 46616128 PCT