Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00909 ATGGGGCACAACTATTTGTGGTTGGTCTTTTGCTTGTGGGCTTTAACATGCTCACTGCTTCCTTCTTTCTCCTTTGGACTTTTGAGAATTGGTTTGAAGAAGAGAGATCTAGATCTTGATAGTATCAGAGCAGCTAGAATGGTAAGAGAAAATCTAAGATTAGGCAGACCTGTGTTGGGTGCAAATGATCAGTATATTGGCAAACCAACCGATGAGGGCATAGTACCTTTGAAGAATTATTTGGATGCACAATATTATGGAGAGATTGGAATTGGCACACCCCCGCAGAAATTTAATGTCATATTTGATACTGGTAGTTCCAACCTCTGGGTTCCATCATCGAAGTGCTATTTTTCTATTGCTTGCTATACCCATCATTGGTACAAGTCAAAGAAATCCAAAACATATACCAAAAATGGAACATCATGTAAAATAAGATATGGATCTGGATCAATATCTGGTTTTTTCAGTAAAGATCATGTTAAAGTTGGTGATGTTGTTGTCAAGAATCAGGATTTCATCGAGGCTACCCGAGAAGGAAGTCTTTCCTTTGTGTTAGCTAAATTTGATGGATTACTTGGGCTTGGGTTTCAGGAGATCTCAGTTGAAAATGCTGTGCCAGTATGGTACAATATGGTGAAGCAAAATCTTGTAAGCGAACAGGTGTTCTCTTTTTGGCTCAATGGTGATCCAAAAGTGAAAAATGGTGGTGAACTAGTTTTTGGAGGTGTTGATCCTAAACACTTCAAAGGAGAACATATCTATGTTCCAGTTACTAAAAAGGGTTACTGGCAGATTGAAATGGGAGATTTTTTCATTGGAGGTCTCTCAACGGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTACTGTTGTAACTGAAATCAATCATGCTATTGGAGCTGAAGGAGTTTTAAGTGTAGAATGTAAGGAAGTTGTTTCTGAATATGGAGAATTGTTATGGGATCTCTTGGTATCTGGGGTACGACCCGATGATGTATGCTCACAGGTTGGCTTATGTTTCAAAAGGACTAAATCAGAGAGCAATGGAATTGAGATGGTGACCGAAAAGGAACAGAGAGAGTTGTCAACTAAAGATACTGCTTTGTGCACTTCCTGTCAGATGCTCGTGGTTTGGATTCAGAATCAACTAAAACAAAAGAAGACCAAGGAGATAGTATTCAACTATGTAAATCAGCTGTGCGAGAGCTTGCCGAGTCCAAATGGAGAGTCAGTAGTAGACTGTAATAGCATTTATGGATTGCCTAACATCACGTTTACTGTTGGAGACAAACCTTTCACCCTCACTCCTGAGCAGTATATTCTGAAAACTGGAGAAGGCATTGCAGAAGTTTGCCTTAGTGGGTTTATTGCTTTTGACATTCCTCCTCCACGGGGTCCTCTCTGGATTCTTGGGGATGTTTTCATGAGGGTATATCACACCGTCTTTGACTATGGCAATCTCCGAGTTGGTTTTGCCAAAGCTGCCTAA 1524 0.4062 MGHNYLWLVFCLWALTCSLLPSFSFGLLRIGLKKRDLDLDSIRAARMVRENLRLGRPVLGANDQYIGKPTDEGIVPLKNYLDAQYYGEIGIGTPPQKFNVIFDTGSSNLWVPSSKCYFSIACYTHHWYKSKKSKTYTKNGTSCKIRYGSGSISGFFSKDHVKVGDVVVKNQDFIEATREGSLSFVLAKFDGLLGLGFQEISVENAVPVWYNMVKQNLVSEQVFSFWLNGDPKVKNGGELVFGGVDPKHFKGEHIYVPVTKKGYWQIEMGDFFIGGLSTGVCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEVVSEYGELLWDLLVSGVRPDDVCSQVGLCFKRTKSESNGIEMVTEKEQRELSTKDTALCTSCQMLVVWIQNQLKQKKTKEIVFNYVNQLCESLPSPNGESVVDCNSIYGLPNITFTVGDKPFTLTPEQYILKTGEGIAEVCLSGFIAFDIPPPRGPLWILGDVFMRVYHTVFDYGNLRVGFAKAA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00909 507 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Gma20g00909 507 SMART sapb_4 279 351 IPR008139 -
Gma20g00909 507 CDD phytepsin 75 505 IPR033869 GO:0004190
Gma20g00909 507 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Gma20g00909 507 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 5 507 IPR001461 GO:0004190|GO:0006508
Gma20g00909 507 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Gma20g00909 507 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Gma20g00909 507 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Gma20g00909 507 PRINTS Pepsin (A1) aspartic protease family signature 480 495 IPR001461 GO:0004190|GO:0006508
Gma20g00909 507 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Gma20g00909 507 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
Gma20g00909 507 Gene3D Acid Proteases 28 243 IPR021109 -
Gma20g00909 507 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 5 507 - -
Gma20g00909 507 SUPERFAMILY Saposin 316 416 IPR011001 -
Gma20g00909 507 ProSiteProfiles Peptidase family A1 domain profile. 85 504 IPR033121 -
Gma20g00909 507 Gene3D - 315 416 - -
Gma20g00909 507 SUPERFAMILY Acid proteases 7 506 IPR021109 -
Gma20g00909 507 Gene3D Acid Proteases 244 507 IPR021109 -
Gma20g00909 507 Pfam Eukaryotic aspartyl protease 84 506 IPR033121 -
Gma20g00909 507 ProSiteProfiles Saposin B type domain profile. 377 418 IPR008139 -
Gma20g00909 507 Pfam Saposin-like type B, region 1 380 416 IPR007856 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00909 Gma-Chr20 35616189 35620980 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00909 K08245 - gmx:547993 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00909 20 35616189 35620980 Gma20g00909 20 35616189 35620980 ECH
Gma10g01416 10 41202681 41207768 Gma20g00909 20 35616189 35620980 GST
Gma19g02139 19 50283127 50287986 Gma20g00909 20 35616189 35620980 PCT
Gma03g02103 03 46575344 46581003 Gma20g00909 20 35616189 35620980 PCT
Gma20g00909 20 35616189 35620980 Gma19g02139 19 50283127 50287986 PCT
Gma20g00909 20 35616189 35620980 Gma03g02103 03 46575344 46581003 PCT