Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02139 ATGGGGCAAAAGCATTTAGTGACGGTGTTCTGTTTATGGGCTTTAACATGTTCCCTTCTTCCATCTTTCTCCTTTGGAATTCTGAGAATTGGTTTGAAGAAGAGACCTCTAGATCTTGATAGTATTAATGCTGCTAGAAAGGCAAGAGAAGGTCTAAGATCTGTAAGACCAATGATGGGTGCACATGATCAGTTTATTGGTAAGTCAAAAGGTGAAGATATAGTACCTTTGAAGAATTATTTGGACGCTCAATATTTTGGTGAGATTGGAATTGGCACACCCCCACAGCCCTTCACTGTTGTGTTTGACACTGGGAGTTCCAACCTTTGGGTTCCATCATCAAAGTGCTACTTTACTCTTGCTTGCTATACTCATAATTGGTACACGGCTAAGAAATCAAAGACACATGTCAAAAATGGAACTTCATGTAAAATAAACTATGGAACTGGATCAATATCTGGTTTCTTCAGTCAAGATAATGTTAAAGTTGGCAGTGCTGTTGTCAAGCATCAGGATTTCATTGAGGCTACCCACGAAGGAAGTCTTACCTTTCTGTCAGCAAAGTTCGATGGAATACTGGGACTTGGATTTCAGGAGATCTCAGTTGAAAATGCTGTGCCCGTATGGTTCAAAATGGTGGAGCAAAAACTTATCGGTGAGAAGGTGTTCTCTTTTTGGCTTAATGGGGATCCGAATGCGAAAAAAGGTGGTGAATTAGTTTTTGGTGGTGTTGACCCAAAGCACTTCAAAGGAAACCACACTTATGTTCCAATTACTGAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTTCGTTGGAGGTGTTTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTGGCTGAAATCAACCATGCCATTGGAGCTGAAGGAGTTCTCAGTGTAGAATGTAAGGAAGTCGTTTCTCAATATGGAGAGTTGATATGGGATCTCTTGGTATCAGGGGTGAAACCAGATGACATATGTTCACAAGTTGGTTTATGTTCTTCCAAAAGGCATCAATCTAAGAGTGCTGGAATTGAAATGGTGACTGAAAAGGAACAGGAAGAGTTGGCAGCGAGAGATACTCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAGAATCAACTAAAACAAAAGGCAACGAAGGACAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGCCTGCCAAGTCCATCTGGAGAGTCAGTGATAAGCTGTAATAGTCTTTCCAAGATGCCAAACATTACGTTCACAATTGGAAATAAACCTTTTGTCCTCACACCAGAGCAGTATATTCTAAGAACTGGAGAAGGCATTACAGAAGTCTGCCTTAGTGGGTTTATTGCTTTTGATGTTCCTCCTCCAAAGGGTCCATTGTGGATTCTTGGCGATGTTTTCATGAGGGCATATCACACCGTCTTTGACTATGGAAATCTCCAAGTTGGCTTTGCCGAAGCAGTCTAA 1527 0.4145 MGQKHLVTVFCLWALTCSLLPSFSFGILRIGLKKRPLDLDSINAARKAREGLRSVRPMMGAHDQFIGKSKGEDIVPLKNYLDAQYFGEIGIGTPPQPFTVVFDTGSSNLWVPSSKCYFTLACYTHNWYTAKKSKTHVKNGTSCKINYGTGSISGFFSQDNVKVGSAVVKHQDFIEATHEGSLTFLSAKFDGILGLGFQEISVENAVPVWFKMVEQKLIGEKVFSFWLNGDPNAKKGGELVFGGVDPKHFKGNHTYVPITEKGYWQIEMGDFFVGGVSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKEVVSQYGELIWDLLVSGVKPDDICSQVGLCSSKRHQSKSAGIEMVTEKEQEELAARDTPLCSSCQMLVLWIQNQLKQKATKDRVFNYVNQLCESLPSPSGESVISCNSLSKMPNITFTIGNKPFVLTPEQYILRTGEGITEVCLSGFIAFDVPPPKGPLWILGDVFMRAYHTVFDYGNLQVGFAEAV 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02139 508 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Gma19g02139 508 SUPERFAMILY Acid proteases 16 507 IPR021109 -
Gma19g02139 508 SUPERFAMILY Saposin 316 417 IPR011001 -
Gma19g02139 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Gma19g02139 508 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Gma19g02139 508 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Gma19g02139 508 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Gma19g02139 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190|GO:0006508
Gma19g02139 508 Gene3D Acid Proteases 244 507 IPR021109 -
Gma19g02139 508 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
Gma19g02139 508 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
Gma19g02139 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 3 508 IPR001461 GO:0004190|GO:0006508
Gma19g02139 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Gma19g02139 508 Gene3D - 315 417 - -
Gma19g02139 508 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 3 508 - -
Gma19g02139 508 CDD phytepsin 75 506 IPR033869 GO:0004190
Gma19g02139 508 SMART sapb_4 279 351 IPR008139 -
Gma19g02139 508 Pfam Saposin-like type B, region 1 380 417 IPR007856 GO:0006629
Gma19g02139 508 Gene3D Acid Proteases 28 243 IPR021109 -
Gma19g02139 508 Pfam Eukaryotic aspartyl protease 84 507 IPR033121 -
Gma19g02139 508 ProSiteProfiles Peptidase family A1 domain profile. 85 505 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02139 Gma-Chr19 50283127 50287986 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02139 K08245 - gmx:548009 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02139 19 50283127 50287986 Gma03g02103 03 46575344 46581003 ECH
Gma19g02139 19 50283127 50287986 Gma19g02139 19 50283127 50287986 ECH
Gma19g02139 19 50283127 50287986 Gma03g02103 03 46575344 46581003 GST
Gma19g02139 19 50283127 50287986 Gma10g01416 10 41202681 41207768 PCT
Gma19g02139 19 50283127 50287986 Gma20g00909 20 35616189 35620980 PCT
Gma10g01416 10 41202681 41207768 Gma19g02139 19 50283127 50287986 PCT
Gma20g00909 20 35616189 35620980 Gma19g02139 19 50283127 50287986 PCT