Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02088 ATGAAGCATTCTCACATTTTACCATTAGCATTCTGTATATTTTTCCTTACTTTAGTTATTCTCGTCCAAGCTAGGCATCATTCTCATCATACAAAACACAAACACTCACATTCTCATAAATCTTCTAAGACTCCAAAGCCTGCACCACCTCCTAGCCCTCCACATAATGAGAACTATAACAATGCCTCTGGCATTCTTGATGTACGAAAATTTGGAGCAATAGGAGATGGAGAAACAGATGATACAGGATCATTCAAGATGGCATGGGACAGTGCCTGCCAAAGTGAATCAGCAGTTAATGTTATCCTTGTACCACAAGGTTTCTCCTTTCTCATTCAGTCCACTATCTTCACTGGTCCTTGTCAAGGTGTCTTGGTATTGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTGAATCTTGGCCTAAGAACAACAGTAGGCATCAATGGCTGGTCTTTTATAGAATCAATGGAATGTCACTGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCCTGTAAGCCTCACAAGGGACCTCATGGGACAACACTCCCAGGACCTTGTGATAGCCCAATTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTGCAAGGACTTAGGATAAAGAACAGTCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAACGTCCATATAGAATCAATCTACATAACAGCTCCAAAACTAAGCCCCAACACTGATGGAATTCACATAGAAAATACCAATGACATGAAAATATACAATTCTGTTATTTCTAATGGTGATGACTGTGTATCCATTGGATCCGGCTGCAACGATGTCGATATTAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGAAATCACAACTCTCGAGCCTGTGTTTCAAACATTATGGTGAGAGACTCCTTCATAAAAGTGACAGATAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTATCTGGAGTAACATTCAGCAATATCCACATGGTTAGTGTAAGAAATCCCATCATAATTGACCAGTTCTACTGCCTCACTAAGGAGTGCACCAACAAGACCTCTGCAGTATCTGTTTCAAATATCATTTACACAAACATAAAGGGCACTTATGATATAAGGAGTCCACCTATGCGTTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGATATTGAGCTTCTTCCTTCTCAAGGAGATATTGTGCATGACCCCTTCTGTTGGAATGCTTATGGAGATTTGGAGACACTAACCATTCCACCGGTTTCTTGCTTGCTTGAGGGCACTCCTCAGTCAGTGTTAGACTATGACATAACTCGTTGCTGA 1389 0.4176 MKHSHILPLAFCIFFLTLVILVQARHHSHHTKHKHSHSHKSSKTPKPAPPPSPPHNENYNNASGILDVRKFGAIGDGETDDTGSFKMAWDSACQSESAVNVILVPQGFSFLIQSTIFTGPCQGVLVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGTTLPGPCDSPIAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNDMKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGNHNSRACVSNIMVRDSFIKVTDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKECTNKTSAVSVSNIIYTNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPSQGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVLDYDITRC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02088 462 MobiDBLite consensus disorder prediction 29 53 - -
Gma19g02088 462 SMART pbh1 338 359 IPR006626 -
Gma19g02088 462 SMART pbh1 279 299 IPR006626 -
Gma19g02088 462 SMART pbh1 309 330 IPR006626 -
Gma19g02088 462 SMART pbh1 256 277 IPR006626 -
Gma19g02088 462 SMART pbh1 229 255 IPR006626 -
Gma19g02088 462 Pfam Glycosyl hydrolases family 28 93 416 IPR000743 GO:0004650|GO:0005975
Gma19g02088 462 PANTHER - 6 452 - -
Gma19g02088 462 SUPERFAMILY Pectin lyase-like 64 452 IPR011050 -
Gma19g02088 462 ProSitePatterns Polygalacturonase active site. 286 299 IPR000743 GO:0004650|GO:0005975
Gma19g02088 462 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 6 452 - -
Gma19g02088 462 Gene3D - 52 449 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02088 Gma-Chr19 49760746 49763376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02088 60 462 Glycoside Hydrolase AT1G02460 71.429 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02088 - - gmx:100778836 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02088 19 49760746 49763376 Gma19g02088 19 49760746 49763376 ECH
Gma03g02049 03 46070916 46073530 Gma19g02088 19 49760746 49763376 ECH
Gma19g02088 19 49760746 49763376 Gma03g02049 03 46070916 46073530 GST
Gma19g02088 19 49760746 49763376 Gma10g00097 10 952910 955622 PCT
Gma19g02088 19 49760746 49763376 Gma02g00089 02 938067 940280 PCT
Gma10g00097 10 952910 955622 Gma19g02088 19 49760746 49763376 PCT
Gma02g00089 02 938067 940280 Gma19g02088 19 49760746 49763376 PCT