Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00089 ATGAGGCATTCTCATATTTTGACACTAGCATTGTCCTTATATTTTCTTGCTTTATTTCTTCCCACCCAAGCTAGGCACCATTACCACAAAAAACACAAGCACTCATATTATCATAATGCACCTGAAATTTCACCATCTCCTGCTCCTGCACCTTCTAATGCTCCTGATGATGCTTCTAGTCCTAGCCCCTCTGGTAACGAGAACTACCACAATGCATCCAGTAACTTATTCGATGTACGAACATTTGGGGCCATTGGAGATGGAATAACTGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCTTGCGAAAGTGAATCACCGGTCAAAGTTATCCTTGTTCCCCAAGGTTTCTCCTTCGTTATTCAATCTACTATTTTCACAGGTCCTTGTAAAGGTGGCTTAGTACTAAAGGTTGATGGCACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAACAGCAAGCGTCAATGGCTTGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATAGATGGGAGAGGAGCAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTAATGGAACAACATCTCCAGGACCTTGTGACAGCCCAGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGATTGAGGATCAAGAACAGCCCCCAATTCCATTTCAGATTTGATGGCTGCGAAAGTGTCCACGTGGAATCAATTTACATAACCGCTCCAGCGCTAAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTGAGAATATACAATTCAGTCATTTCTAATGGTGATGACTGCGTGTCCATTGGAGCTGGTTGCCATGATGTTGATATAAAGAACATCACCTGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGAAATCACAACTCTAGAGCCTGTGTTTCAAACATTACGGTGAGGGACTCGGTTATAAAAGTGGCAGATAATGGGGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCTGGTGTGACATTCAGTAACATTCACATGGAAAGTGTAAGGAACCCTATTATAATTGACCAGTTTTACTGCCTTAGTAAGGATTGCTCCAACAAGACCTCTGCAGTCTTTGTAACGGATATAGTTTACACAAACATAAAGGGTACATATGACATAAGGCATCCACCAATGCGTTTTGCTTGCAGTGACTCTGTACCATGCACCAACTTGACCCTCTCAGATATTGAGCTTCTTCCTGCTCAAGGAAACATAGTGCTCGATCCTTTCTGCTGGAGTGCCTATGGAAACTCTGAGACACTAACAATTCCCCCAGTCTTTTGCATGCTGGAAGGCCTTCCTCAGTCCATTTCAGGCAATGACATAGATCATTGCTGA 1422 0.4318 MRHSHILTLALSLYFLALFLPTQARHHYHKKHKHSYYHNAPEISPSPAPAPSNAPDDASSPSPSGNENYHNASSNLFDVRTFGAIGDGITDDTESFKMAWDTACESESPVKVILVPQGFSFVIQSTIFTGPCKGGLVLKVDGTLMPPDGPESWPKNNSKRQWLVFYRINGMSLEGSGLIDGRGAKWWDLPCKPHKGPNGTTSPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVADNGVRIKTWQGGSGSVSGVTFSNIHMESVRNPIIIDQFYCLSKDCSNKTSAVFVTDIVYTNIKGTYDIRHPPMRFACSDSVPCTNLTLSDIELLPAQGNIVLDPFCWSAYGNSETLTIPPVFCMLEGLPQSISGNDIDHC 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00089 473 SUPERFAMILY Pectin lyase-like 74 459 IPR011050 -
Gma02g00089 473 Pfam Glycosyl hydrolases family 28 110 426 IPR000743 GO:0004650|GO:0005975
Gma02g00089 473 PANTHER - 7 463 - -
Gma02g00089 473 SMART pbh1 349 370 IPR006626 -
Gma02g00089 473 SMART pbh1 267 288 IPR006626 -
Gma02g00089 473 SMART pbh1 290 310 IPR006626 -
Gma02g00089 473 SMART pbh1 240 266 IPR006626 -
Gma02g00089 473 SMART pbh1 320 341 IPR006626 -
Gma02g00089 473 MobiDBLite consensus disorder prediction 39 70 - -
Gma02g00089 473 ProSitePatterns Polygalacturonase active site. 297 310 IPR000743 GO:0004650|GO:0005975
Gma02g00089 473 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 463 - -
Gma02g00089 473 Gene3D - 63 457 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00089 Gma-Chr2 938067 940280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00089 76 473 Glycoside Hydrolase AT1G02460 73.067 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00089 - - gmx:100792285 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00089 02 938067 940280 Gma02g00089 02 938067 940280 ECH
Gma02g00089 02 938067 940280 Gma10g00097 10 952910 955622 ECH
Gma10g00097 10 952910 955622 Gma02g00089 02 938067 940280 GST
Gma19g02088 19 49760746 49763376 Gma02g00089 02 938067 940280 PCT
Gma03g02049 03 46070916 46073530 Gma02g00089 02 938067 940280 PCT
Gma02g00089 02 938067 940280 Gma19g02088 19 49760746 49763376 PCT
Gma02g00089 02 938067 940280 Gma03g02049 03 46070916 46073530 PCT