Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00097 ATGAGGCATTGTCATATTTTGACACTAGCATTGTCCTTATATTTTCTTGCTTTATTTCTTCCCACCCAAGCTAGGCACCATTACCACAAAAAACACAAGCACACATATTATCATAATGCACCTGAAATTTCACCATCTCCTGCTCCTGCTCCTGCACCTTCTAATGCTTCTGATGAAGCTACTAGTCCTAGCCCCTCTGATAACGAGAACTACCACAATGCATCTAATAGCTTATTCGATGTACGAACATTTGGGGCCATTGGAGATGGAATAACTGATGATACAGAGTCATTCAAAATGGCATGGGACACTGCTTGCCAAAGTGAATCGCCGGTCAAAGTTATCCTTGTTCCCCAAGGTTTCTCCTTCGTTATTCAATCTACTATTTTCACAGGTCCTTGTAAAGGTGGCTTAGTACTAAAGGTTGATGGCACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAATAGTAAGCGTCAATGGCTTGTCTTTTTTAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATAGATGGGAGAGGAGCAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTAATGGAACAACATCTCCAGGACCTTGTGACAGCCCAGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGACTCAGAATTAAGAACAGCCCCCAGTTTCATTTCAGATTTGATGGCTGCGAAAGTGTCCACGTGGAATCAATTTACATAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTGAGAATATACAATTCAGTCATTTCTAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATCACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGAAATCACAACTCTAGAGCCTGTGTTTCAAACATTACGGTGAGGGATTCGGTTATAAAAGTGTCAGATAATGGGGTTAGAATCAAGACATGGCAAGGTGGAGCAGGATCAGTATCAGGTGTGACATTCAGTAACATTCACATGGAAAGTGTAAGGAACCCTATTATAGTTGACCAGTTTTACTGCCTCAGTAAGGATTGCTCCAACAAGACCTCTGCAGTCTTTGTAACGGACATAGTTTACGCAAACATAAAGGGAACATATGACATAAGGCATCCACCAATGCGTTTTGCTTGCAGTGATTCTGTGCCATGCACCAACTTGACCCTCTCAGATATTGAGCTTCTTCCTGATCAAGGAGACATAGTGCTTGATCCTTTCTGCTGGAGTGCCTATGGAAACTCTGAGACACTAACCATTCCCCCAGTATTTTGCTTGTTGGAAGGCCTTCCTCAGTCCATTTCAGGCAATGACATAGATCATTGCTGA 1428 0.4279 MRHCHILTLALSLYFLALFLPTQARHHYHKKHKHTYYHNAPEISPSPAPAPAPSNASDEATSPSPSDNENYHNASNSLFDVRTFGAIGDGITDDTESFKMAWDTACQSESPVKVILVPQGFSFVIQSTIFTGPCKGGLVLKVDGTLMPPDGPESWPKNNSKRQWLVFFRINGMSLEGSGLIDGRGAKWWDLPCKPHKGPNGTTSPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGAGSVSGVTFSNIHMESVRNPIIVDQFYCLSKDCSNKTSAVFVTDIVYANIKGTYDIRHPPMRFACSDSVPCTNLTLSDIELLPDQGDIVLDPFCWSAYGNSETLTIPPVFCLLEGLPQSISGNDIDHC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00097 475 SMART pbh1 292 312 IPR006626 -
Gma10g00097 475 SMART pbh1 351 372 IPR006626 -
Gma10g00097 475 SMART pbh1 242 268 IPR006626 -
Gma10g00097 475 SMART pbh1 269 290 IPR006626 -
Gma10g00097 475 SMART pbh1 322 343 IPR006626 -
Gma10g00097 475 Pfam Glycosyl hydrolases family 28 106 428 IPR000743 GO:0004650|GO:0005975
Gma10g00097 475 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 465 - -
Gma10g00097 475 Gene3D - 63 457 IPR012334 -
Gma10g00097 475 MobiDBLite consensus disorder prediction 55 72 - -
Gma10g00097 475 PANTHER - 7 465 - -
Gma10g00097 475 ProSitePatterns Polygalacturonase active site. 299 312 IPR000743 GO:0004650|GO:0005975
Gma10g00097 475 MobiDBLite consensus disorder prediction 39 72 - -
Gma10g00097 475 SUPERFAMILY Pectin lyase-like 76 463 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00097 Gma-Chr10 952910 955622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00097 75 475 Glycoside Hydrolase AT1G02460 72.277 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00097 - - gmx:100776338 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00097 10 952910 955622 Gma10g00097 10 952910 955622 ECH
Gma02g00089 02 938067 940280 Gma10g00097 10 952910 955622 ECH
Gma10g00097 10 952910 955622 Gma02g00089 02 938067 940280 GST
Gma19g02088 19 49760746 49763376 Gma10g00097 10 952910 955622 PCT
Gma03g02049 03 46070916 46073530 Gma10g00097 10 952910 955622 PCT
Gma10g00097 10 952910 955622 Gma19g02088 19 49760746 49763376 PCT
Gma10g00097 10 952910 955622 Gma03g02049 03 46070916 46073530 PCT