Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01966 ATGCAGAGAATGGCGTACACGTTTTCGTTTCCGGAGGAGGTGCTGGAGCACGTGTTCTCGTTCATATGGAACGAGAGGGACAGGAACGCGATCTCGCTGGTGTGTAAGTCATGGTACGAGATCGAGAGGTGGTGCAGGAGGAAGGTGTTCGTGGGGAACTGCTACGCGGTGAGCCCTCTGATGGTGGTCAAGCGGTTCCCGGAGGTGAGATCCATTGCGCTCAAAGGGAAGCCGCACTTTGCGGACTTCAATTTGGTCCCCGATGGCTGGGGAGGTTACGTCTGCCCCTGGATCGCCGCCATGGCTCGCGCCTTCCCCTGCCTCGAAGAAATCAGGCTCAAGAGGATGGTCATCACCGACGAGAGCTTGGAACTCATCGCTAAGTCCTTCAAGAACTTCAAGGTCTTGGTTCTCACTTCCTGTGAGGGTTTTACCACTGATGGACTTGCCGCCATTGCTGCCAACTGCAGGAATTTGAGGGAATTGGACTTGCAAGAGAGTGAAGTGGAGGAGGACCTTAGTGGGCACTGGCTAAGCCATTTTCCTGATTCCTATACGTCATTAGTTTCACTTAACATCTCTTGCTTAAACAATGAGGTGAGTTTATCTGCGCTAGAGCGTCTGCTTGGGAGGTGTCCCAACCTGCGGACCCTCCGTCTCAATCGTGCCGTGCCCCTTGATAGACTACCCAACCTACTTCTCCAGTGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACTCAACTGAGATGCGACCAGAGGTCTTCTCAAACCTGGAAGCAGCATTTTCTGGCTGCAAGCAGTTGAAGAGCTTGTCTGGCTTTTGGGATGTGCTCCCATCCTACCTTCCAGCTGTCTACCCCATCTGCTCAAGGCTAACATCGCTAAACTTGAGTTATGCTATTATTCAAAGCTCTGATCTTATTAAGCTTATCAGTCAATGCCCAAATTTGTTGCGATTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTTATGCCCTTGCTGCATCATGTAAGGATCTAAGAGAGTTAAGGGTGTTTCCTTCTGACCCATTTGGTTTAGAACCAAATGTTGCATTGACAGAACAGGGCCTTGTCTCTGTGTCTGAAGGTTGCCCCAAGCTCCAATCAGTTCTATATTTTTGTCGTCAAATGTCGAATGCAGCCCTACATACAATTGCGCGGAACAGGACTAATTTGACTCGTTTTCGGCTTTGTATTATTGAGCCTCGGACTCCTGACTATCTAACCCATGAACCCCTGGATTCTGGTTTTGGGGCTATTGTAGAGCAATGCAAGGATCTTCAACGCCTATCCCTATCTGGTCTTCTTACTGACCGTGTTTTCGAGTATATCGGGACTTGTGGTAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGATAGTGATTTGGGACTTCATCATGTGCTATCAGGGTGTGATAATCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGGCCCTTTTGGCAAATGCTGAAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCGGTGAGTTATGGAGCATGTAAGCTACTGGGTCAGAAAATGCCAAGACTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATGATTGTCCAGTTGAGAAGCTTTATATATACAGGACTATTGCCGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAAGATGATTCTTCACTAAGGCTTGAGTGA 1764 0.4904 MQRMAYTFSFPEEVLEHVFSFIWNERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPLMVVKRFPEVRSIALKGKPHFADFNLVPDGWGGYVCPWIAAMARAFPCLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEEDLSGHWLSHFPDSYTSLVSLNISCLNNEVSLSALERLLGRCPNLRTLRLNRAVPLDRLPNLLLQCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYAIIQSSDLIKLISQCPNLLRLWVLDYIEDAGLYALAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRTNLTRFRLCIIEPRTPDYLTHEPLDSGFGAIVEQCKDLQRLSLSGLLTDRVFEYIGTCGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAEKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPDDCPVEKLYIYRTIAGPRLDMPGFVWTMEDDSSLRLE 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01966 587 SUPERFAMILY RNI-like 28 536 - -
Gma19g01966 587 Pfam F-box 8 48 IPR041567 -
Gma19g01966 587 Pfam Transport inhibitor response 1 protein domain 67 113 IPR041101 -
Gma19g01966 587 Gene3D - 3 46 - -
Gma19g01966 587 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 8 579 - -
Gma19g01966 587 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 8 579 - -
Gma19g01966 587 SMART LRR_CC_2 433 456 IPR006553 -
Gma19g01966 587 SMART LRR_CC_2 130 155 IPR006553 -
Gma19g01966 587 SMART LRR_CC_2 315 338 IPR006553 -
Gma19g01966 587 SMART LRR_CC_2 290 314 IPR006553 -
Gma19g01966 587 SMART LRR_CC_2 482 506 IPR006553 -
Gma19g01966 587 SMART LRR_CC_2 105 129 IPR006553 -
Gma19g01966 587 SMART LRR_CC_2 373 397 IPR006553 -
Gma19g01966 587 Gene3D Ribonuclease Inhibitor 47 578 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01966 Gma-Chr19 48762949 48766117 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01966 K14485 - gmx:100779021 1194.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01966 19 48762949 48766117 Gma19g01966 19 48762949 48766117 ECH
Gma19g01966 19 48762949 48766117 Gma03g01924 03 45127359 45131154 GST
Gma19g01966 19 48762949 48766117 Gma10g00208 10 1900075 1903385 PCT
Gma19g01966 19 48762949 48766117 Gma02g01391 02 16078401 16081665 PCT
Gma10g00208 10 1900075 1903385 Gma19g01966 19 48762949 48766117 PCT
Gma02g01391 02 16078401 16081665 Gma19g01966 19 48762949 48766117 PCT