Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01948 ATGCTGAGCGTGCTGCGCGTGCACCTTCCTTCTGATATTCCCATTGTAGGCTGTGAGCTCACGCCTTACGTGCTCCTACGCCGACCTGATAAGATCGTTACCACCGACGATGTCCCCGAAACCGCCCCGTTAGACGGCCATTTCTTGCGCTACAAGTGGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCCGGCCACACTGCAGTGCCTAGGTTGTGTAAAGTCTAAAATACCTGTTGCCAAAAGTTACCACTGCACTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACATGACCGTGCTGCAAGTGCAGCCAATGAAAATGGAAATGAGGAAGAAGAGTTATATGGGCGATTTAATAATTCTGGATCTGGATCAATCAATACCAGCTTATCTGCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCACCTGTGTATCCGGCAGCCGTTACGCAACGAAGTGGTGGTGAAACTTGGTTTGAAGTAGGGCAATTTAAGACGTATACCCCAACAGCTGATGACATTGGACATGTCCTTAAATTCGAGTGTACTGTAGTTGATGCAGAGACCAAACTTACTGTAGGGCATGTAAACACTCTACTAACTTCCCGTGTCATTCCTGCTCCCTCGCCTAGCCCGCGCCGACTGATACCTGTTGATGGGATGGGACATTTGGATGCTGATGGGCGTATAACatcttcaggaacttttactgttctatcatacaacatattatctgatgcatatgcctcaaatgatctatacaattactgccctacgtgggctctttccTGGCCATATCGTAGGCAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGGTTCAAAGTGATCATTATGAAGATTTTTTTTCTCCTGAACTGGACAAACATGGCTATTATGGTTTTTACAAAAGGAAAACAAATGAGGTTGTTTACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAAAAATATGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCGACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAGGATAATATTGCACTAATAGTCGTTTTAGAAGCAAAAGTTATCAATCAGCCTGTTGATAATCCAGGGAAAAGACAGCTTCTTTGTGTAGCAAATACACATGTAAATGTTCACCATGATTTAATGGATGTCAAACTCTGGCAGGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCCAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCATCGCATCCTGATTTAGCAGTTGACCCACTTAATATATTGCGACCTCACAGCAAGTTGGTTCACCAGTTGCCACTGGTCAGTGCTTATTCGTCTTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAGCATAAACGGAGACTAGATGACACAACAAATGAACCTTTATTCACAAATGTAACTAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTGCTGGAGTTATTGGATGAGGAAAGTTTGAGGAAAGACACAGCACTTCCTTCTCCTGAATGGTCCTCTGATCATATAGCTCTGTTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGCTGA 1806 0.4086 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKIVTTDDVPETAPLDGHFLRYKWYRVQSDKKVAVCSVHPSEPATLQCLGCVKSKIPVAKSYHCTPKCFSDAWQHHRVLHDRAASAANENGNEEEELYGRFNNSGSGSINTSLSASASSASLTNGSAPVYPAAVTQRSGGETWFEVGQFKTYTPTADDIGHVLKFECTVVDAETKLTVGHVNTLLTSRVIPAPSPSPRRLIPVDGMGHLDADGRITSSGTFTVLSYNILSDAYASNDLYNYCPTWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYEDFFSPELDKHGYYGFYKRKTNEVVYNGNINTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAVIPTTQKKTALNRLVKDNIALIVVLEAKVINQPVDNPGKRQLLCVANTHVNVHHDLMDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSIPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGFEQHKRRLDDTTNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01948 601 Gene3D Endonuclease/exonuclease/phosphatase 221 600 IPR036691 -
Gma19g01948 601 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 596 - -
Gma19g01948 601 CDD Deadenylase_CCR4 252 594 - -
Gma19g01948 601 SUPERFAMILY DNase I-like 246 595 IPR036691 -
Gma19g01948 601 Pfam Endonuclease/Exonuclease/phosphatase family 253 585 IPR005135 GO:0003824
Gma19g01948 601 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01948 Gma-Chr19 48615415 48619930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01948 278 461 EF-hand Containing Proteins AT5G54130 24.103 5.70e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01948 K12603 - gmx:100775270 1163.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01948 19 48615415 48619930 Gma19g01948 19 48615415 48619930 ECH
Gma19g01948 19 48615415 48619930 Gma03g01908 03 44978427 44985100 GST
Gma19g01948 19 48615415 48619930 Gma02g01563 02 31307421 31314161 PCT
Gma02g01563 02 31307421 31314161 Gma19g01948 19 48615415 48619930 PCT