Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01908 ATGCTGAGCGTGCTGCGCGTGCACCTTCCTTCTGATATTCCCATTGTAGGCTGTGAGCTCACGCCTTACGTGCTCCTACGCCGACCTGATAAGACCGTTACCACCGATGATTTCCCGGAAACCGCCCCGTTAGACGGCCATTTCTTGCGCTACAAGTGGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCAGGCCGCACTGCAGTGCCTAGGTTGTGTAAAGGCTAAAATACCTGTTGCCAAAAGTTATCACTGCTCTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACATGACCGTGCTGCAAGTGCAGCTAATGAAAATGGAAATGAAGAAGAAGAGTTATATGGGCGATTTAATAATTCTGGATCTGGATCTGGATCAATCAATACCAGCTTATCTTCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCACCTGTGTATCCAGCAGCTGTGACGCAACGGAGTGGTGGTGAAACTTGGTTTGAAGTTGGACAATTTAAGACGTATACCCCAACAGCTGATGACATTGGACATGTCCTTAAATTCGAGTGTGCTGTAGTTGATTCAGAGACCAAACTTGCTGTAGGGCATGTAAACACTCTACTAACTTCCCGTGTCATTCCTGCTCCCTCGCCTAGCCCGCGCCGACTGATACCTGTTGATGGGATGGGACATTTGGATGCTGATGGGCGTATAACatcttcaggaacttttactgttctatcatacaacatattatctgatgcatatgcctcaaatgacctatacaattactgcccttcgtgggctctttccTGGCCATATCGCAGGCAAAATCTGTTACGAGAAATAGTTGGTTACCGTGCAGATATTATTTGTCTTCAGGAGGTTCAAAGTGATCATTATGAAGAATTTTTTTCTCCTGAACTGGACAAACATGGTTATTATGGTCTTTACAAAAAGAAAACAAATGAGGTATACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACCACTCAGAAGAAAACTGCCTTGAATAGATTGGTTAAGGATAATGTTGCACTAATAGTTGTTTTAGAAGCAAAAGTTAACAATCAGCCTGTTGATAATCCAGGGAAAAGACAGCTTCTTTGTGTGGCAAATACACATGTAAATGTTCACCATGATTTAAaGGATGTCAAACTGTGGCAGGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCAAGTGCAGATATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCATCGCATCCTGATTTAGCAGTTGACCCACTTAATATATTGCGTCCTCACAGCAAGTTGGTTCACCAGTTGCCACTGGTCAGTGCTTATTCGTCTTTTGCTAGAACGGTTGGTCTTGGATTTGAGCAGCATAAAGGGAGACTAGACAATGCAACAAATGAACCTTTATTCACAAATGTAACGAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTGTTGGAGCTATTGGATGAGGAAAGTTTGAGGAAAGACACAGCACTTCCTTCTCCTGAATGGTCCTCTGATCATATAGCTATGTTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGTTGA 1809 0.4057 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDFPETAPLDGHFLRYKWYRVQSDKKVAVCSVHPSEQAALQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAANENGNEEEELYGRFNNSGSGSGSINTSLSSSASSASLTNGSAPVYPAAVTQRSGGETWFEVGQFKTYTPTADDIGHVLKFECAVVDSETKLAVGHVNTLLTSRVIPAPSPSPRRLIPVDGMGHLDADGRITSSGTFTVLSYNILSDAYASNDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYEEFFSPELDKHGYYGLYKKKTNEVYNGNINTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAVIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTHVNVHHDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSIPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGFEQHKGRLDNATNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIAMLAEFRCCKNRSRR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01908 602 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 597 - -
Gma03g01908 602 MobiDBLite consensus disorder prediction 113 132 - -
Gma03g01908 602 SUPERFAMILY DNase I-like 248 596 IPR036691 -
Gma03g01908 602 Pfam Endonuclease/Exonuclease/phosphatase family 255 586 IPR005135 GO:0003824
Gma03g01908 602 Gene3D Endonuclease/exonuclease/phosphatase 223 601 IPR036691 -
Gma03g01908 602 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 597 - -
Gma03g01908 602 CDD Deadenylase_CCR4 254 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01908 Gma-Chr3 44978427 44985100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01908 280 462 EF-hand Containing Proteins AT5G54130 24.227 9.11e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01908 K12603 - gmx:100808935 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01908 03 44978427 44985100 Gma03g01908 03 44978427 44985100 ECH
Gma19g01948 19 48615415 48619930 Gma03g01908 03 44978427 44985100 GST
Gma03g01908 03 44978427 44985100 Gma02g01563 02 31307421 31314161 PCT
Gma02g01563 02 31307421 31314161 Gma03g01908 03 44978427 44985100 PCT