Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01887 ATGGCTCCTCCTTCTTCTTATTACATTATTCTCTTTCTATTACTATCTCTTCTCTCTCACACAGCATTCACTTTCTCCAACTCCATCACTCTCCCTCTCTCCCCTCTCCTCACCAAACCTCATTCCTCAGACTCAGATCCATTCCACTCTGTCAAACTCGCCGCTTCCTCTTCCCTAACCCGGGCCCACCACCTCAAACACCGCAACAACAACTCCCCCTCCGTCGCCACAACCCCAGCATACCCCAAATCCTACGGTGGATACTCCATAGATCTCAACCTCGGAACCCCACCCCAAACCTCCCCTTTCGTTCTGGACACAGGTAGCAGCCTCGTATGGTTCCCCTGCACCTCCCACTACCTCTGCTCCCATTGCAACTTCCCCAATATCGACCCCACCAAAATCCCCACCTTCATTCCGAAAAACTCCTCCACCGCCAAACTCCTCGGTTGCAGAAACCCCAAATGTGGCTACCTCTTTGGCCCCGACGTTGAATCTCGCTGCCCCCAATGCAAAAAACCAGGATCCCAAAACTGTTCCCTCACGTGCCCCTCCTACATCATCCAATACGGCCTAGGCGCCACCGCAGGCTTCTTACTCCTCGACAACCTTAATTTCCCTGGAAAAACCGTTCCTCAATTCCTCGTAGGTTGCTCCATCCTCTCCATTCGACAACCCTCAGGAATCGCCGGCTTCGGTCGCGGCCAAGAGTCTCTCCCCTCACAAATGAATCTCAAAAGATTCTCTTACTGCTTAGTTTCCCACCGCTTCGACGATACCCCGCAAAGCAGCGACCTCGTTTTGCAGATTAGTTCCACTGGCGACACCAAAACTAACGGCCTCAGCTACACGCCGTTTCGCTCGAACCCGTCCAACAACTCCGTGTTCCGTGAGTACTACTACGTGACTCTTCGCAAGCTCATTGTCGGGGGCGTGGATGTGAAGATTCCGTACAAGTTTTTGGAGCCTGGCTCTGACGGTAACGGCGGCACCATCGTGGACTCTGGATCCACCTTCACGTTCATGGAAAGGCCCGTTTATAATTTGGTGGCCCAAGAGTTTCTGAGGCAGCTGGGGAAGAAATATTCCAGGGAAGAGAACGTTGAGGCCCAATCTGGGTTGAGTCCCTGCTTTAATATCTCCGGCGTCAAGACCATCAGTTTCCCCGAGTTTACTTTTCAGTTCAAAGGAGGCGCCAAAATGTCGCAGCCGCTTCTGAATTATTTCTCGTTTGTCGGCGATGCCGAGGTCTTATGTTTCACCGTTGTCTCCGACGGTGGTGCCGGTCAGCCGAAGACCGCCGGTCCGGCCATCATCTTGGGGAACTATCAGCAGCAGAATTTCTACGTTGAATATGATTTGGAGAATGAGAGGTTCGGATTTGGTCCTCGTAATTGCAAAAGGAAAGCTTAG 1413 0.5223 MAPPSSYYIILFLLLSLLSHTAFTFSNSITLPLSPLLTKPHSSDSDPFHSVKLAASSSLTRAHHLKHRNNNSPSVATTPAYPKSYGGYSIDLNLGTPPQTSPFVLDTGSSLVWFPCTSHYLCSHCNFPNIDPTKIPTFIPKNSSTAKLLGCRNPKCGYLFGPDVESRCPQCKKPGSQNCSLTCPSYIIQYGLGATAGFLLLDNLNFPGKTVPQFLVGCSILSIRQPSGIAGFGRGQESLPSQMNLKRFSYCLVSHRFDDTPQSSDLVLQISSTGDTKTNGLSYTPFRSNPSNNSVFREYYYVTLRKLIVGGVDVKIPYKFLEPGSDGNGGTIVDSGSTFTFMERPVYNLVAQEFLRQLGKKYSREENVEAQSGLSPCFNISGVKTISFPEFTFQFKGGAKMSQPLLNYFSFVGDAEVLCFTVVSDGGAGQPKTAGPAIILGNYQQQNFYVEYDLENERFGFGPRNCKRKA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01887 470 PRINTS Pepsin (A1) aspartic protease family signature 94 114 IPR001461 GO:0004190|GO:0006508
Gma19g01887 470 PRINTS Pepsin (A1) aspartic protease family signature 331 342 IPR001461 GO:0004190|GO:0006508
Gma19g01887 470 PRINTS Pepsin (A1) aspartic protease family signature 438 453 IPR001461 GO:0004190|GO:0006508
Gma19g01887 470 CDD pepsin_A_like_plant 87 466 IPR034161 -
Gma19g01887 470 Pfam Xylanase inhibitor C-terminal 300 462 IPR032799 -
Gma19g01887 470 SUPERFAMILY Acid proteases 83 466 IPR021109 -
Gma19g01887 470 Gene3D Acid Proteases 268 470 IPR021109 -
Gma19g01887 470 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 103 114 IPR001969 GO:0004190|GO:0006508
Gma19g01887 470 ProSiteProfiles Peptidase family A1 domain profile. 88 462 IPR033121 -
Gma19g01887 470 PANTHER BNACNNG47670D PROTEIN 6 466 - -
Gma19g01887 470 Pfam Xylanase inhibitor N-terminal 88 265 IPR032861 -
Gma19g01887 470 Gene3D Acid Proteases 40 267 IPR021109 -
Gma19g01887 470 PANTHER OS07G0603500 PROTEIN-RELATED 6 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01887 Gma-Chr19 48075765 48077370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01887 59 468 Miscellaneous Gene Families AT1G44130 24.661 1.04e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01887 - - gmx:100788618 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01887 19 48075765 48077370 Gma19g01887 19 48075765 48077370 ECH
Gma19g01887 19 48075765 48077370 Gma03g01846 03 44457915 44458495 GST
Gma19g01887 19 48075765 48077370 Gma10g00726 10 8915989 8917683 PCT
Gma19g01887 19 48075765 48077370 Gma02g01878 02 43597555 43599346 PCT
Gma10g00726 10 8915989 8917683 Gma19g01887 19 48075765 48077370 PCT
Gma02g01878 02 43597555 43599346 Gma19g01887 19 48075765 48077370 PCT