Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g01878 ATGCTTTTGAGTTGTTTTTCTTTTCCCCCTTCCAAAATGCCTTCTTCTCACATTCTTTTCTCCCTCCTCTCTTTCCTCTCCATCATAATCACTACCTTCTCTTCATCCACACCCAACACCATCACTCTCCATCTCTCTCCCTTATTCACCAACCACCCCTCTTCAAGTTCACACCCATTCCACACCCTCAAACTCGCCGTCTCAACATCCATCACAAGAGCCCACCACCTTAAAAACCACAAACCAAACAAGTCACTCGAAACCCCAGTTCACCCCAAAACCTACGGAGGCTACTCAATAGACCTCGAATTCGGAACCCCGTCACAAACCTTCCCCTTTGTTCTCGACACCGGTAGCACCCTCGTCTGGCTCCCGTGCTCCTCTCACTACCTCTGCTCCAAATGCAACTCCTCCTCAAACACGCCAAAGTTCATCCCTAAAAACTCGTCTTCTTCAAAGTTCGTTGGCTGCACCAACCCTAAATGCGCCTGGGTCTTCGGCCCAGACGTTAAATCCCATTGCTGCAGGCAAGACAAAGCTGCTTTTAATAATTGTTCCCAAACATGCCCTGCCTACACCGTCCAGTACGGCCTCGGCTCCACCGCGGGTTTTCTCTTATCCGAAAATCTCAACTTTCCCACCAAAAAATACTCCGATTTTCTCCTCGGCTGCTCCGTCGTCTCCGTCTACCAGCCGGCCGGAATCGCGGGGTTCGGTCGGGGAGAAGAGTCGCTGCCGTCGCAGATGAACCTCACGAGATTCTCTTACTGCTTACTCTCTCACCAGTTCGACGATTCCGCAACAATAACCAGCAACCTCGTCTTGGAAACCGCTTCCTCACGCGACGGAAAAACCAACGGCGTCAGCTACACGCCGTTTCTGAAAAACCCTACCACGAAGAAAAACCCCGCGTTCGGCGCGTACTATTACATCACTCTTAAAAGGATCGTAGTAGGAGAAAAGCGCGTGAGGGTTCCGAGGAGGCTGTTGGAGCCCAACGTCGACGGCGATGGTGGGTTCATCGTTGACTCCGGGTCAACGTTCACGTTCATGGAGAGACCGATTTTCGATCTGGTGGCGCAGGAGTTTGCAAAGCAGGTGAGTTACACGCGCGCGAGGGAGGCTGAGAAGCAATTTGGGTTGAGTCCGTGTTTTGTGTTGGCGGGTGGTGCTGAAACGGCGTCGTTTCCCGAGCTGAGGTTTGAGTTCAGGGGTGGCGCGAAGATGAGGCTGCCGGTGGCGAATTATTTCTCGCTGGTGGGGAAAGGTGACGTGGCGTGCTTGACGATTGTGTCTGATGACGTGGCGGGTTCTGGTGGGACGGTGGGACCCGCTGTGATATTGGGGAATTATCAGCAGCAGAATTTTTATGTGGAGTATGACTTGGAGAACGAGAGGTTTGGGTTTCGGAGTCAGAGTTGCCAAACGAACGTTTAA 1437 0.5233 MLLSCFSFPPSKMPSSHILFSLLSFLSIIITTFSSSTPNTITLHLSPLFTNHPSSSSHPFHTLKLAVSTSITRAHHLKNHKPNKSLETPVHPKTYGGYSIDLEFGTPSQTFPFVLDTGSTLVWLPCSSHYLCSKCNSSSNTPKFIPKNSSSSKFVGCTNPKCAWVFGPDVKSHCCRQDKAAFNNCSQTCPAYTVQYGLGSTAGFLLSENLNFPTKKYSDFLLGCSVVSVYQPAGIAGFGRGEESLPSQMNLTRFSYCLLSHQFDDSATITSNLVLETASSRDGKTNGVSYTPFLKNPTTKKNPAFGAYYYITLKRIVVGEKRVRVPRRLLEPNVDGDGGFIVDSGSTFTFMERPIFDLVAQEFAKQVSYTRAREAEKQFGLSPCFVLAGGAETASFPELRFEFRGGAKMRLPVANYFSLVGKGDVACLTIVSDDVAGSGGTVGPAVILGNYQQQNFYVEYDLENERFGFRSQSCQTNV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g01878 478 Pfam Xylanase inhibitor C-terminal 309 470 IPR032799 -
Gma02g01878 478 PANTHER OS07G0603500 PROTEIN-RELATED 15 474 - -
Gma02g01878 478 Pfam Xylanase inhibitor N-terminal 98 261 IPR032861 -
Gma02g01878 478 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 113 124 IPR001969 GO:0004190|GO:0006508
Gma02g01878 478 SUPERFAMILY Acid proteases 93 474 IPR021109 -
Gma02g01878 478 Gene3D Acid Proteases 276 478 IPR021109 -
Gma02g01878 478 PANTHER BNACNNG47670D PROTEIN 15 474 - -
Gma02g01878 478 CDD pepsin_A_like_plant 97 474 IPR034161 -
Gma02g01878 478 PRINTS Pepsin (A1) aspartic protease family signature 446 461 IPR001461 GO:0004190|GO:0006508
Gma02g01878 478 PRINTS Pepsin (A1) aspartic protease family signature 340 351 IPR001461 GO:0004190|GO:0006508
Gma02g01878 478 PRINTS Pepsin (A1) aspartic protease family signature 104 124 IPR001461 GO:0004190|GO:0006508
Gma02g01878 478 ProSiteProfiles Peptidase family A1 domain profile. 98 470 IPR033121 -
Gma02g01878 478 Gene3D Acid Proteases 74 270 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g01878 Gma-Chr2 43597555 43599346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g01878 96 474 Miscellaneous Gene Families AT1G44130 23.544 3.79e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g01878 - - gmx:100808552 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01878 02 43597555 43599346 Gma02g01878 02 43597555 43599346 ECH
Gma10g00726 10 8915989 8917683 Gma02g01878 02 43597555 43599346 GST
Gma19g01887 19 48075765 48077370 Gma02g01878 02 43597555 43599346 PCT
Gma03g01846 03 44457915 44458495 Gma02g01878 02 43597555 43599346 PCT
Gma02g01878 02 43597555 43599346 Gma19g01887 19 48075765 48077370 PCT
Gma02g01878 02 43597555 43599346 Gma03g01846 03 44457915 44458495 PCT