Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01650 ATGGCCTTATCCATGGATTCTCTTCCCAAATTGCGCCACCCTTCCCCATTTCCCACTCCCTTATCCTCTTCCATCTCCTTCCGATCTTTGCCGCCACCTCACTTTCCCTCTTCCTCCTCCTCCTCGTTTAGGTTACACTCCATCAGACCCTCCTCCCAAAACCACCCCTCGTTTCGCACCCCCTCCCTCCCCCCTCTCCTCCAAACCCTAACCTCCTTCCTCTCCCCCGTCGTCGAAACCACCTGCATCGTCATCGCCGCCGcTGCCTTATTCTTCATGCGCTTCCACCACACACCCCCCGCCATCGCCGCCCCGCTCACTCCCCCCGCCGCCGAGTCCGACACCGCCTTCACCGAGGAGGAAGCCGAGAGTCTTCTCGAAGAGCGTCTCAGCACCAACCCGCGCGACACCGACGCGCTCCACGCGCTCATGGAGGTCAAAATCAGAGCGCGTAAAATGGACGAAGCGTTTGGGGTTTTAGACCGTTTGATTGAGCTTGAACCGGAGGAGCTGGAGTGGCCGCTCCTGAAGGCGAACATGCACATCTACAACGACGACCACGCCAGCGCGCGCGAACTGTTCGAGGAAATCCTCAAGAAAGACCCGCTCCGCGTGGAAGCGTTCCACGGCCTCGTCATGGCGACTTCGCAGTCCAACGAGCCCTTGAAAGGGTTATTGAAGAGGGTGGAAGAAGCAATTGAGGTGTGCAAGAAGCAAAAAAGGGATTCCGATGTTAGAGACTTCAGGCTCTTGATTGCGCAGGTTAAAGTCATGGAAGGGGATTTCTCTGAGGCGCTTAAGGCTTATCAGGAATTAGTCAAAGAAGAGCCTAGGGATTTTAGGCCTTACTTGTGTCAGGGTATTATATATACCCTCCTTAGGAAGAAAGATGAAGCTGATAAACAATTCGACAAGTTTCGCAGGCTTGTTCCAAAGGACCACCCTTACAAGGATTATTTCGAGGACAACATGTTCGCCACCAAGTTCTTCTCGCAGAAATTGGAGAGGGAGGGAGCTGGTGCCAGGGGCTGA 1032 0.5475 MALSMDSLPKLRHPSPFPTPLSSSISFRSLPPPHFPSSSSSSFRLHSIRPSSQNHPSFRTPSLPPLLQTLTSFLSPVVETTCIVIAAAALFFMRFHHTPPAIAAPLTPPAAESDTAFTEEEAESLLEERLSTNPRDTDALHALMEVKIRARKMDEAFGVLDRLIELEPEELEWPLLKANMHIYNDDHASARELFEEILKKDPLRVEAFHGLVMATSQSNEPLKGLLKRVEEAIEVCKKQKRDSDVRDFRLLIAQVKVMEGDFSEALKAYQELVKEEPRDFRPYLCQGIIYTLLRKKDEADKQFDKFRRLVPKDHPYKDYFEDNMFATKFFSQKLEREGAGARG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01650 343 Coils Coil 222 242 - -
Gma19g01650 343 Gene3D Tetratricopeptide repeat domain 108 325 IPR011990 GO:0005515
Gma19g01650 343 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 11 336 - -
Gma19g01650 343 MobiDBLite consensus disorder prediction 41 61 - -
Gma19g01650 343 Pfam Tetratricopeptide repeat 250 278 IPR019734 GO:0005515
Gma19g01650 343 ProSiteProfiles TPR repeat profile. 246 279 IPR019734 GO:0005515
Gma19g01650 343 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 11 336 - -
Gma19g01650 343 SUPERFAMILY TPR-like 120 311 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01650 Gma-Chr19 45886319 45887350 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01650 - - gmx:100778644 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01650 19 45886319 45887350 Gma03g01604 03 42252052 42253552 GST
Gma19g01650 19 45886319 45887350 Gma13g01133 13 25479246 25480373 PCT
Gma13g01133 13 25479246 25480373 Gma19g01650 19 45886319 45887350 PCT