Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01133 ATGGAGTCTCTCCCAAAAATTCGTCATTCTCACATCTCACTCAATCACTCACTACTTCAACGAGGTTCTCAGTGCCATCGTTCTTCATTTCCGACACCCTTCTCTTCCCTCTCTCCACCACTCCCTCCATTCTCTCCTATCAGAGTCTCATCTTCACCATCACCGTCACCCAAACCCCAAAACCCCTTAACCCTAAACCTTCTTCTCCCTCCTCTCGTCAAACCCACCTGCATCGCCATAGCCGCGACCGCATTCTTCTTCATGCGCCTCCACTCTCCCCCCGTTGCATTCGCATCGACGCCGGTCGCTCCACCGGAATCCGCCGAGTCGGAAACTCTACCCAACGAAAGCGCCACTGAGGAGCAACTTCGCACCACCGACACCGACGCGCTTCAATCGCTCCTTCAAACCAAGATCAGAGCCCTCGAAATCAACGAAGCGATTCGCGTTTTAGACCGTCTGACCGAGCTCGAGCCCGAGGAGTCCGAGTACCCGCTCCTAAAGGCTCACCTGCACATGCGCTACGGCGAGCACGAGCTCGCCGCGAACGTGTTCGAGGAATTGCTTCACAGAGATCCGTTCCACGTGGAGGCCTATCGCGGCCTCTTAATGCTGACTTCAGAGACAAACAAGCCAACGGAGGAACTATTGAAGAGAATCGAAGAGGCCGCCGCGAAGGTTTGCGAGGAACAAGAGAGGGATTCCGATGTGAGGGACCTTAAGTTGTTGATTGCGCAGATAAAGGTTATCAATGGGGATTTATCCGAAGCACTGAAGGTGTATGAGGAGCTTGTTAAGGAAGAGCCTAAGGATTTTAGACCTTACTTGTGTCAGGGTATTGTGTATTCCATGCTGAGAAAGAAGGATGAAGCTGAGAAACAGTTTGAGAAGTATCGTGCTCTTGTCCCAGAGGATCATCCTTATAAGCATCATTTTGAGGAAAATACTCAGTTTTTGGAGAGGAGAGGAGTAGGTGGTGCAAAGAGCTGA 990 0.5152 MESLPKIRHSHISLNHSLLQRGSQCHRSSFPTPFSSLSPPLPPFSPIRVSSSPSPSPKPQNPLTLNLLLPPLVKPTCIAIAATAFFFMRLHSPPVAFASTPVAPPESAESETLPNESATEEQLRTTDTDALQSLLQTKIRALEINEAIRVLDRLTELEPEESEYPLLKAHLHMRYGEHELAANVFEELLHRDPFHVEAYRGLLMLTSETNKPTEELLKRIEEAAAKVCEEQERDSDVRDLKLLIAQIKVINGDLSEALKVYEELVKEEPKDFRPYLCQGIVYSMLRKKDEAEKQFEKYRALVPEDHPYKHHFEENTQFLERRGVGGAKS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01133 329 SUPERFAMILY TPR-like 144 305 IPR011990 GO:0005515
Gma13g01133 329 Pfam Tetratricopeptide repeat 245 304 - -
Gma13g01133 329 Pfam Tetratricopeptide repeat 167 204 - -
Gma13g01133 329 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 325 - -
Gma13g01133 329 MobiDBLite consensus disorder prediction 110 125 - -
Gma13g01133 329 Gene3D Tetratricopeptide repeat domain 102 323 IPR011990 GO:0005515
Gma13g01133 329 SMART tpr_5 272 305 IPR019734 GO:0005515
Gma13g01133 329 SMART tpr_5 162 195 IPR019734 GO:0005515
Gma13g01133 329 SMART tpr_5 238 271 IPR019734 GO:0005515
Gma13g01133 329 MobiDBLite consensus disorder prediction 100 125 - -
Gma13g01133 329 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01133 Gma-Chr13 25479246 25480373 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01133 - - gmx:100812214 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01650 19 45886319 45887350 Gma13g01133 13 25479246 25480373 PCT
Gma03g01604 03 42252052 42253552 Gma13g01133 13 25479246 25480373 PCT
Gma13g01133 13 25479246 25480373 Gma19g01650 19 45886319 45887350 PCT
Gma13g01133 13 25479246 25480373 Gma03g01604 03 42252052 42253552 PCT