Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01604 ATGTTCACACTCACTTCTCCTTCTTCCAGGGCCTTACCCATGGATTCTCTTCCCAAATTGCGCCACCCTTCTCCATTTCCCACTCCCTTATCCTCTTCCCTCTCCTTCCGCTCTTTACCGCCACCCCATTTTCCTTCGTCGTCGTTTAGGTTACCCTCCATCAGAGCCTCCTCCTCACCCTCCCAAAACGACCCCGCTTTTCGCACCCCGAGAAACACGCCCTCCCTCCcCCCCCTCCTCCAAACCCTAACCTCCTTCCTCTCCCCCCTCCTCGAAACCACCTGCATCGTCATCGCCGCCGCCGCCTTCTTCTTCATGCGCTTCCACCACACGCCCGCCGTCATCGCCGCTCCGCTCACTTCCCCCGCCGCGGAAACCGACACCGCCTTCACCCAGGAGGAAGCCGAGAGGCTTCTCGAAGAGCGTCTGAGCACCAACCCTCGCGATACCGAGGCGCTCCACGCGCTCATGGAGGTCAAAATCAAAGCGCGTAAGATGGACGAAGCGTTCGAGGTTTTGAACCGTCTGATTGAGCTCGAACCGGAGGAGCAGGAGTGGCCGCTCCTGAAGGCAAACATGCACATCTACAACGACGACCACGCCAGCGCGCGCAAACTGTTCGAGGAAATCCTCAAGAAAGACCCGCTCCGCGTGGAAGCGTTTCACGGCCTCGTCATGGCGACTGCGCAGTCCAACGAGCCCTTGAAAAGTTTGTTGAAGAGAGTGGAAGAAGCAATTGAGGTGTGCAAAAAGCAAAAGAAGGATTCCGATGTTAGAGACTTCAGGCTCTTGATTGCGCAGATTAAAGTCATGGAAGGAGATTACACTGAAGCACTCAAGGCTTATCAGGAATTGGTGAAGGAAGAGCCTAGGGATTTTAGACCTTACTTGTGTCAGGGTATTATTTATACTCTCCTTAGGAAGAAAGATGAAGCTGATAAACAATTCAATAAGTTTCGCAGGCTTGTTCCCAAGGACCATCCTTACAAGGACTATTTCGAGGACAACATGTTCGCTACCAAGTTCTTCTCGCAGAAATTGGAGAGGGAGGGAGCTGGTGCTAGGGGCTGA 1071 0.5387 MFTLTSPSSRALPMDSLPKLRHPSPFPTPLSSSLSFRSLPPPHFPSSSFRLPSIRASSSPSQNDPAFRTPRNTPSLPPLLQTLTSFLSPLLETTCIVIAAAAFFFMRFHHTPAVIAAPLTSPAAETDTAFTQEEAERLLEERLSTNPRDTEALHALMEVKIKARKMDEAFEVLNRLIELEPEEQEWPLLKANMHIYNDDHASARKLFEEILKKDPLRVEAFHGLVMATAQSNEPLKSLLKRVEEAIEVCKKQKKDSDVRDFRLLIAQIKVMEGDYTEALKAYQELVKEEPRDFRPYLCQGIIYTLLRKKDEADKQFNKFRRLVPKDHPYKDYFEDNMFATKFFSQKLEREGAGARG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01604 356 SMART tpr_5 293 326 IPR019734 GO:0005515
Gma03g01604 356 SMART tpr_5 150 183 IPR019734 GO:0005515
Gma03g01604 356 SMART tpr_5 259 292 IPR019734 GO:0005515
Gma03g01604 356 SUPERFAMILY TPR-like 132 324 IPR011990 GO:0005515
Gma03g01604 356 Coils Coil 235 255 - -
Gma03g01604 356 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 16 349 - -
Gma03g01604 356 MobiDBLite consensus disorder prediction 50 74 - -
Gma03g01604 356 Pfam Tetratricopeptide repeat 263 291 IPR019734 GO:0005515
Gma03g01604 356 Gene3D Tetratricopeptide repeat domain 123 337 IPR011990 GO:0005515
Gma03g01604 356 ProSiteProfiles TPR repeat profile. 150 183 IPR019734 GO:0005515
Gma03g01604 356 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 16 349 - -
Gma03g01604 356 MobiDBLite consensus disorder prediction 1 34 - -
Gma03g01604 356 ProSiteProfiles TPR repeat profile. 259 292 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01604 Gma-Chr3 42252052 42253552 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01604 - - gmx:102661172 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01650 19 45886319 45887350 Gma03g01604 03 42252052 42253552 GST
Gma03g01604 03 42252052 42253552 Gma13g01133 13 25479246 25480373 PCT
Gma13g01133 13 25479246 25480373 Gma03g01604 03 42252052 42253552 PCT