Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01325 ATGGCCCTCCTCAAACACCTCCTCCTCTCATTCACCATGATCATCATTTCTTTTGTTGCTTGTTATAGCACTTTGCAAGAGGACCCACCTAGTAGTATATATGTTGATCATTCACCTTCTATTGACGATGGTGGGACAGTCAAGAACTTGATCGAGCAAAGCACAAATGTTTTGAGCTTAAACAGGTTTGACAAGCGTAATTCGCTTAAAAAGGTTAGTGTCAATGATTATGGAGCTAAGGGGAATGGTGATACTGATGACACAGAGGCTTTCAAGAAGGCTTGGGATGTAGTATGTTCTTCTGGGGAAGCAATTCTTGTGGTGCCTCAGGCGAATTATTTGCTCAAACCAATCAGATTCTCTGGCCCTTGCGAACCTAACGTTGAAGTCCAGATTTCTGGAACCCTTGATGCATCAGATGATCCATCAGATTACGAAGATGACAGCAAACACTGGCTTGTATTTGACAATATTAAGAAACTATTTGTTTATGGTGGTGGAACCATTGATGGAAACGGCAACATATGGTGGAAAAACTCATGCAAAAGGAACAAAAAGCGTCCCTGCAAGGATGCCCCAACGGCTCTGACTTTCTATAATTGCGAGGACTTAACAGTTGAGAATTTGAGAATAGAAAATGCTCAACAAATCCACGTTTCATTTCAGGACTCCGTGAATGTTCAGGTTTCTGGCCTTAACGTGACCGCACCAGAGGATAGCCCCAACACTGATGGGATTCATGTCACCAATACGCAAAATATTCAAATCTCAAGCTCTGTGATAGGAACTGGTGATGATTGTATATCTATTGTACATGGATCTAAAGATGTAGAAGCCACAGATATTACCTGTGGACCGGGCCATGGTATCAGTATTGGAAGCTTAGGGGCCGGAAAATCCAAGGAATTTGTTTCAGGAATACGAGTGAATAGAGCCAAGATTTTTGGAACTAAAAATGGAGTTAGAATTAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGCGACATCCAGTTTCAGAACATTGAAATGGACAATGTGACCAACCCCATAATAATAAATCAGAATTACTGCGACAAGAAAAAGAAGCCATGCAAAAAACTGCTCTCGAAGAAATCCGCGATCCAAATCAAGAATGTGTTGTACCAGAACATAACGGGCACAAGTGCTTCTGATATAGCTGTGAGGTTTGATTGCAGCGATAAATTTCCATGCCAGGAGATAGTGTTGCAGAACATAGACCTCCAATGTGAAGGAGGAGATGATGCCGATGCTATGTGTAACAATGTTGAATTGTCTTACTTAGGACACGTTAGGCCTCGTTGCAACTCAAAAAAGAGAAAGGCATTTACTACTATTACCTCCATATTGAAATACTTCTCATGGTACATATGA 1392 0.4152 MALLKHLLLSFTMIIISFVACYSTLQEDPPSSIYVDHSPSIDDGGTVKNLIEQSTNVLSLNRFDKRNSLKKVSVNDYGAKGNGDTDDTEAFKKAWDVVCSSGEAILVVPQANYLLKPIRFSGPCEPNVEVQISGTLDASDDPSDYEDDSKHWLVFDNIKKLFVYGGGTIDGNGNIWWKNSCKRNKKRPCKDAPTALTFYNCEDLTVENLRIENAQQIHVSFQDSVNVQVSGLNVTAPEDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVHGSKDVEATDITCGPGHGISIGSLGAGKSKEFVSGIRVNRAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMDNVTNPIIINQNYCDKKKKPCKKLLSKKSAIQIKNVLYQNITGTSASDIAVRFDCSDKFPCQEIVLQNIDLQCEGGDDADAMCNNVELSYLGHVRPRCNSKKRKAFTTITSILKYFSWYI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01325 463 Pfam Glycosyl hydrolases family 28 105 430 IPR000743 GO:0004650|GO:0005975
Gma19g01325 463 SMART pbh1 251 272 IPR006626 -
Gma19g01325 463 SMART pbh1 224 250 IPR006626 -
Gma19g01325 463 SMART pbh1 304 325 IPR006626 -
Gma19g01325 463 SMART pbh1 333 354 IPR006626 -
Gma19g01325 463 SMART pbh1 201 221 IPR006626 -
Gma19g01325 463 SUPERFAMILY Pectin lyase-like 70 445 IPR011050 -
Gma19g01325 463 Gene3D - 54 460 IPR012334 -
Gma19g01325 463 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gma19g01325 463 ProSitePatterns Polygalacturonase active site. 281 294 IPR000743 GO:0004650|GO:0005975
Gma19g01325 463 PANTHER ENDO POLYGALACTURONASE 7 447 - -
Gma19g01325 463 PANTHER - 7 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01325 Gma-Chr19 42546723 42549664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01325 50 443 Glycoside Hydrolase AT2G41850 57.606 2.08e-147 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01325 K01184 - gmx:100797601 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01325 19 42546723 42549664 Gma19g01325 19 42546723 42549664 ECH
Gma19g01325 19 42546723 42549664 Gma03g01274 03 38811855 38816624 GST
Gma02g01718 02 36757458 36761333 Gma19g01325 19 42546723 42549664 PCT